Chicken QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2021-06-04
Updated: 2024-04-23

Publication # 33436657 Details

Authors:	Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, Kaiser P, Stevens MP (Contact: apsifidi@rvc.ac.uk)
Affiliation:	The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK
Title:	Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter
Journal:	Scientific Reports, 11(1): 1623 (2021)	DOI: 10.1038/s41598-020-79005-7
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Campylobacter intestinal colonization reported for chromosome(s): Chr.14: Asso:222736, Asso:222738, Asso:222740. Chr.16: Asso:222734, Asso:222735, QTL:222741, QTL:222742, QTL:222743, QTL:222744. Chr.19: QTL:222745. Chr.26: Asso:222733, Asso:222737, Asso:222739. QTL/association Reported by chromosomes: Chr.14 (3), Chr.16 (6), Chr.19 (1), Chr.26 (3). Number of gene-based eQTL/associations: eQTL for transmembrane protein 11 (TMEM11): Chr.14: eQTL:222766; eQTL for COP9 signalosome subunit 3 (COPS3): Chr.14: eQTL:222765; eQTL for BG-like antigen 1 (BG1): Chr.16: eQTL:222838; eQTL for glutamate ionotropic receptor NMDA type subunit 3B (GRIN3B): Chr.16: eQTL:222749; eQTL for spermidine/spermine N1-acetyltransferase 1 (SAT1): Chr.16: eQTL:222746; eQTL for microRNA 1553 (MIR1553): Chr.26: eQTL:222748; eQTL by their cis/trans acting types: cis eQTL: 222750, 222751, 222752, 222753, 222754, 222755, 222756, 222757, 222758, 222759, 222760, 222761, 222762, 222763, 222764, 222765, 222766, 222767, 222768, 222769, 222770, 222771, 222772, 222773, 222774, 222775, 222776, 222777, 222778, 222779, 222780, 222781, 222782, 222783, 222784, 222785, 222786, 222787, 222788, 222789, 222790, 222791, 222792, 222793, 222794, 222795, 222796, 222797, 222798, 222799, 222800, 222801, 222802, 222803, 222804, 222805, 222806, 222807, 222808, 222809, 222810, 222811, 222812, 222813, 222814, 222815, 222816, 222817, 222818, 222819, 222820, 222821, 222822, 222823, 222824, 222825, 222826, 222827, 222828, 222829, 222830, 222831, 222832, 222833, 222834, 222835, 222836, 222837, 222838. trans eQTL: 222746, 222747, 222748, 222749.

Cite this Dataset:

Animal QTLdb: Dataset from Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, Kaiser P, Stevens MP (2021). Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter. Scientific reports, 11(1): 1623; Curated into QTLdb on 2021-06-04. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=CnFt9J8StD

Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, Kaiser P, Stevens MP (2021). Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter. Scientific reports, 11(1): 1623; DOI: https://dx.doi.org/10.1038/s41598-020-79005-7

Publication # 33436657 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations:

eQTL by their cis/trans acting types: