Pig QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2020-04-24
Updated: 2024-04-23

Publication # 31373884 Details

Authors:	Drag MH, Kogelman LJA, Maribo H, Meinert L, Thomsen PD, Kadarmideen HN (Contact: hajak@dtu.dk)
Affiliation:	Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark
Title:	Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis
Journal:	Physiological Genomics, 51(10): 488-499 (2020)	DOI: 10.1152/physiolgenomics.00125.2018
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Fat androstenone level reported for chromosome(s): Chr.X: eQTL:194746, eQTL:194755. Chr.1: eQTL:194684, eQTL:194691, eQTL:194692, eQTL:194699, eQTL:194702, eQTL:194708, eQTL:194743, eQTL:194744, eQTL:194753, eQTL:194754. Chr.2: eQTL:194677, eQTL:194678, eQTL:194679, eQTL:194683, eQTL:194690, eQTL:194711, eQTL:194766, eQTL:194768, eQTL:194769, eQTL:194779, eQTL:194785, eQTL:194788, eQTL:194789. Chr.3: eQTL:194700, eQTL:194747, eQTL:194756, eQTL:194760, eQTL:194767, eQTL:194792. Chr.4: eQTL:194712, eQTL:194717, eQTL:194718, eQTL:194728, eQTL:194729, eQTL:194730, eQTL:194731, eQTL:194732, eQTL:194733, eQTL:194737, eQTL:194748, eQTL:194778. Chr.5: eQTL:194672, eQTL:194673, eQTL:194726, eQTL:194749, eQTL:194757, eQTL:194780, eQTL:194783. Chr.6: eQTL:194695, eQTL:194713, eQTL:194724, eQTL:194736, eQTL:194773, eQTL:194799. Chr.7: eQTL:194670, eQTL:194671, eQTL:194686, eQTL:194698, eQTL:194716, eQTL:194734, eQTL:194735, eQTL:194738, eQTL:194742, eQTL:194762, eQTL:194764, eQTL:194782. Chr.8: eQTL:194721. Chr.9: eQTL:194687, eQTL:194693, eQTL:194725, eQTL:194740, eQTL:194775, eQTL:194794. Chr.10: eQTL:194694, eQTL:194741, eQTL:194752, eQTL:194781. Chr.11: eQTL:194685. Chr.12: eQTL:194706, eQTL:194719, eQTL:194727, eQTL:194759, eQTL:194761, eQTL:194772. Chr.13: eQTL:194696, eQTL:194703, eQTL:194707, eQTL:194714, eQTL:194763. Chr.14: eQTL:194688, eQTL:194697, eQTL:194710, eQTL:194715, eQTL:194720, eQTL:194723, eQTL:194745, eQTL:194751, eQTL:194765, eQTL:194770, eQTL:194777, eQTL:194786, eQTL:194791, eQTL:194797, eQTL:194798. Chr.15: eQTL:194739, eQTL:194776, eQTL:194790, eQTL:194795, eQTL:194800. Chr.16: eQTL:194676, eQTL:194750, eQTL:194758, eQTL:194796. Chr.17: eQTL:194674, eQTL:194675, eQTL:194682, eQTL:194689, eQTL:194701, eQTL:194704, eQTL:194705, eQTL:194774, eQTL:194784, eQTL:194787, eQTL:194793. Chr.18: eQTL:194680, eQTL:194681, eQTL:194709, eQTL:194722, eQTL:194771. QTL/association Reported by chromosomes: Chr.X (2), Chr.1 (10), Chr.2 (13), Chr.3 (6), Chr.4 (12), Chr.5 (7), Chr.6 (6), Chr.7 (12), Chr.8 (1), Chr.9 (6), Chr.10 (4), Chr.11 (1), Chr.12 (6), Chr.13 (5), Chr.14 (15), Chr.15 (5), Chr.16 (4), Chr.17 (11), Chr.18 (5). Number of gene-based eQTL/associations: eQTL for zinc finger protein 185 with LIM domain (ZNF185): Chr.X: eQTL:194755; eQTL for synaptojanin 2 (SYNJ2): Chr.1: eQTL:194691; eQTL for distal membrane arm assembly complex 1 (DMAC1): Chr.1: eQTL:194699; eQTL for glycogen phosphorylase L (PYGL): Chr.1: eQTL:194754; eQTL for CDK5 regulatory subunit associated protein 2 (CDK5RAP2): Chr.1: eQTL:194744; eQTL for pappalysin 1 (PAPPA): Chr.1: eQTL:194692; eQTL for solute carrier family 22 member 1 (SLC22A1): Chr.1: eQTL:194684; eQTL for peptidase M20 domain containing 2 (PM20D2): Chr.1: eQTL:194708; eQTL for RNA polymerase I subunit E (POLR1E): Chr.1: eQTL:194753; eQTL for repulsive guidance molecule BMP co-receptor b (RGMB): Chr.2: eQTL:194711; eQTL for interferon induced transmembrane protein 5 (IFITM5): Chr.2: eQTL:194789; eQTL for family with sequence similarity 53 member C (FAM53C): Chr.2: eQTL:194679; eQTL for interferon-induced transmembrane protein 1 (IFITM1): Chr.2: eQTL:194788; eQTL for USH1 protein network component harmonin (USH1C): Chr.2: eQTL:194779; eQTL for receptor accessory protein 5 (REEP5): Chr.2: eQTL:194690; eQTL for protein-glucosylgalactosylhydroxylysine glucosidase (PGGHG): Chr.2: eQTL:194785; eQTL for major vault protein (MVP): Chr.3: eQTL:194700; eQTL for actin related protein 2/3 complex subunit 1B (ARPC1B): Chr.3: eQTL:194756; eQTL for radial spoke head 10 homolog B (LOC100516852): Chr.3: eQTL:194760; eQTL for ring finger protein 181 (RNF181): Chr.3: eQTL:194767; eQTL for mal, T cell differentiation protein 2 (MAL2): Chr.4: eQTL:194731; eQTL for leucine rich repeat containing 8 VRAC subunit D (LRRC8D): Chr.4: eQTL:194733; eQTL for EPS8 like 3 (EPS8L3): Chr.4: eQTL:194729; eQTL for cadherin 17 (CDH17): Chr.4: eQTL:194778; eQTL for phosphoglycerate dehydrogenase (PHGDH): Chr.4: eQTL:194717; eQTL for threonyl-tRNA synthetase 2, mitochondrial (TARS2): Chr.4: eQTL:194732; eQTL for dihydropyrimidine dehydrogenase (DPYD): Chr.4: eQTL:194748; eQTL for TNF alpha induced protein 8 like 2 (TNFAIP8L2): Chr.4: eQTL:194737; eQTL for cellular communication network factor 4 (CCN4): Chr.4: eQTL:194718; eQTL for keratin 4 (KRT4): Chr.5: eQTL:194757; eQTL for tachykinin 3 (TAC3): Chr.5: eQTL:194672; eQTL for apoptotic peptidase activating factor 1 (APAF1): Chr.5: eQTL:194780; eQTL for peroxisome proliferator activated receptor alpha (PPARA): Chr.5: eQTL:194749; eQTL for keratin 8 (KRT8): Chr.5: eQTL:194726; eQTL for retinol dehydrogenase 16 (RDH16): Chr.5: eQTL:194673; eQTL for RNA polymerase III subunit H (POLR3H): Chr.5: eQTL:194783; eQTL for sphingomyelin phosphodiesterase 3 (SMPD3): Chr.6: eQTL:194736; eQTL for peroxisomal biogenesis factor 10 (PEX10): Chr.6: eQTL:194799; eQTL for desmoglein 3 (DSG3): Chr.6: eQTL:194724; eQTL for ATPase secretory pathway Ca2+ transporting 2 (ATP2C2): Chr.6: eQTL:194713; eQTL for sphingosine kinase 2 (SPHK2): Chr.6: eQTL:194695; eQTL for peptidyl arginine deiminase 2 (PADI2): Chr.6: eQTL:194773; eQTL for tyrosyl-DNA phosphodiesterase 2 (TDP2): Chr.7: eQTL:194735; eQTL for glial cells missing homolog 1 (Drosophila) (GCM1): Chr.7: eQTL:194734; eQTL for glycine N-methyltransferase (GNMT): Chr.7: eQTL:194764; eQTL for bone morphogenetic protein 5 (BMP5): Chr.7: eQTL:194686; eQTL for leucine rich repeat and fibronectin type III domain containing 2 (LRFN2): Chr.7: eQTL:194738; eQTL for PKHD1 ciliary IPT domain containing fibrocystin/polyductin (PKHD1): Chr.7: eQTL:194782; eQTL for cytochrome P450, family 1, subfamily A, polypeptide 2 (CYP1A2): Chr.7: eQTL:194742; eQTL for methylmalonyl-CoA mutase (MMUT): Chr.7: eQTL:194762; eQTL for isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha (IDH3A): Chr.7: eQTL:194671; eQTL for sterile alpha motif domain containing 15 (SAMD15): Chr.7: eQTL:194698; eQTL for exosome component 9 (EXOSC9): Chr.8: eQTL:194721; eQTL for amphiphysin (AMPH): Chr.9: eQTL:194740; eQTL for coiled-coil domain containing 84 (CCDC84): Chr.9: eQTL:194794; eQTL for tubulin folding cofactor E (TBCE): Chr.9: eQTL:194693; eQTL for potassium two pore domain channel subfamily K member 2 (KCNK2): Chr.9: eQTL:194775; eQTL for C-C motif chemokine ligand 27 (CCL27): Chr.10: eQTL:194752; eQTL for IDNK gluconokinase (IDNK): Chr.10: eQTL:194694; eQTL for BMP/retinoic acid inducible neural specific 3 (BRINP3): Chr.10: eQTL:194781; eQTL for mitochondrial intermediate peptidase (MIPEP): Chr.11: eQTL:194685; eQTL for schlafen family member 13 (SLFN13): Chr.12: eQTL:194761; eQTL for transient receptor potential cation channel subfamily V member 2 (TRPV2): Chr.12: eQTL:194772; eQTL for ankyrin repeat and FYVE domain containing 1 (ANKFY1): Chr.12: eQTL:194759; eQTL for phosphatidylethanolamine N-methyltransferase (PEMT): Chr.12: eQTL:194719; eQTL for ankyrin repeat and fibronectin type III domain containing 1 (ANKFN1): Chr.12: eQTL:194727; eQTL for glutamate ionotropic receptor kainate type subunit 1 (GRIK1): Chr.13: eQTL:194703; eQTL for zinc finger protein 662 (ZNF662): Chr.13: eQTL:194763; eQTL for prolyl 4-hydroxylase, transmembrane (P4HTM): Chr.13: eQTL:194707; eQTL for ADP-ribosylarginine hydrolase (ADPRH): Chr.13: eQTL:194714; eQTL for SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 (SPOCK3): Chr.14: eQTL:194715; eQTL for epoxide hydrolase 2 (EPHX2): Chr.14: eQTL:194765; eQTL for Ras association domain family member 4 (RASSF4): Chr.14: eQTL:194791; eQTL for LIM domain kinase 2 (LIMK2): Chr.14: eQTL:194688; eQTL for DEAH-box helicase 37 (DHX37): Chr.14: eQTL:194751; eQTL for RAB11 family interacting protein 2 (RAB11FIP2): Chr.14: eQTL:194720; eQTL for acyl-CoA synthetase long chain family member 5 (ACSL5): Chr.14: eQTL:194770; eQTL for opsin 4 (OPN4): Chr.14: eQTL:194797; eQTL for exostosin like glycosyltransferase 3 (EXTL3): Chr.14: eQTL:194777; eQTL for actin binding LIM protein 1 (ABLIM1): Chr.14: eQTL:194798; eQTL for SPHK1 interactor, AKAP domain containing (SPHKAP): Chr.15: eQTL:194795; eQTL for NADH:ubiquinone oxidoreductase subunit A10 (NDUFA10): Chr.15: eQTL:194776; eQTL for RAB11 family interacting protein 5 (RAB11FIP5): Chr.15: eQTL:194800; eQTL for MARVEL domain containing 2 (MARVELD2): Chr.16: eQTL:194676; eQTL for solute carrier family 6 member 19 (SLC6A19): Chr.16: eQTL:194796; eQTL for gamma-aminobutyric acid type A receptor subunit beta2 (GABRB2): Chr.16: eQTL:194758; eQTL for tribbles pseudokinase 3 (TRIB3): Chr.17: eQTL:194705; eQTL for SPO11 initiator of meiotic double stranded breaks (SPO11): Chr.17: eQTL:194682; eQTL for cerebellin 4 precursor (CBLN4): Chr.17: eQTL:194784; eQTL for heparan-alpha-glucosaminide N-acetyltransferase (HGSNAT): Chr.17: eQTL:194793; eQTL for cystatin F (CST7): Chr.17: eQTL:194701; eQTL for caspase 2 (CASP2): Chr.18: eQTL:194681; eQTL for transient receptor potential cation channel subfamily V member 6 (TRPV6): Chr.18: eQTL:194771; eQTL for DENN domain containing 11 (DENND11): Chr.18: eQTL:194709; eQTL for MyoD family inhibitor domain containing (MDFIC): Chr.18: eQTL:194722; eQTL by their cis/trans acting types: cis eQTL: 194670, 194671, 194672, 194673, 194674, 194675, 194676, 194677, 194678, 194679, 194680, 194681, 194682, 194683, 194684, 194685, 194686, 194687, 194688, 194689, 194690, 194691, 194692, 194693, 194694, 194695, 194696, 194697, 194698, 194699, 194700, 194701, 194702, 194703, 194704, 194705, 194706, 194707, 194708, 194709, 194710, 194711, 194712, 194713, 194714, 194715, 194716, 194717, 194718, 194719, 194720, 194721, 194722, 194723, 194724, 194725, 194726, 194727, 194728, 194729, 194730, 194731, 194732, 194733, 194734, 194735, 194736, 194737, 194738, 194739, 194740, 194741, 194742, 194743, 194744, 194745, 194746, 194747, 194748, 194749, 194750, 194751, 194752, 194753, 194754, 194755, 194756, 194757, 194758, 194759, 194760, 194761, 194762, 194763, 194764, 194765, 194766, 194767, 194768, 194769, 194770, 194771, 194772, 194773, 194774, 194775, 194776, 194777, 194778, 194779, 194780, 194781, 194782, 194783, 194784, 194785, 194786, 194787, 194788, 194789, 194790, 194791, 194792, 194793, 194794, 194795, 194796, 194797, 194798, 194799, 194800.

Cite this Dataset:

Animal QTLdb: Dataset from Drag MH, Kogelman LJA, Maribo H, Meinert L, Thomsen PD, Kadarmideen HN (2020). Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis. Physiological genomics, 51(10): 488-499; Curated into QTLdb on 2020-04-24. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=FgSa8N4LaP

Drag MH, Kogelman LJA, Maribo H, Meinert L, Thomsen PD, Kadarmideen HN (2020). Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis. Physiological genomics, 51(10): 488-499; DOI: https://dx.doi.org/10.1152/physiolgenomics.00125.2018

Publication # 31373884 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations:

eQTL by their cis/trans acting types: