Cattle QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2021-12-15
Updated: 2024-04-23

Publication # 30987590 Details

Authors:	van den Berg I, Hayes B J, Chamberlain A J, Goddard M E (Contact: irene.vandenberg@ecodev.vic.gov.au)
Affiliation:	Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, Victoria, Australia
Title:	Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle
Journal:	BMC Genomics, 20(1): 291 (2019)	DOI: 10.1186/s12864-019-5656-7
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Milk yield reported for chromosome(s): Chr.3: QTL:239759. Chr.5: QTL:239760. Chr.18: QTL:239761. Chr.23: QTL:239762. Chr.26: QTL:239763. Chr.29: QTL:239755. QTL for Milk fat yield reported for chromosome(s): Chr.14: QTL:239764. Chr.18: QTL:239757, QTL:239765, QTL:239766. Chr.23: QTL:239767. Chr.26: QTL:239768, QTL:239769. QTL for Milk protein percentage reported for chromosome(s): Chr.5: QTL:239775. Chr.11: QTL:239776. Chr.14: QTL:239777. Chr.18: QTL:239758, QTL:239771, QTL:239778, QTL:239779. Chr.26: QTL:239780. QTL for Milk protein yield reported for chromosome(s): Chr.11: QTL:239770. QTL for Milk fat percentage reported for chromosome(s): Chr.5: QTL:239772, QTL:239773. Chr.26: QTL:239774. QTL for Calving interval reported for chromosome(s): Chr.6: QTL:239781. Chr.10: QTL:239782. Chr.21: QTL:239783. QTL/association Reported by chromosomes: Chr.3 (1), Chr.5 (4), Chr.6 (1), Chr.10 (1), Chr.11 (2), Chr.14 (2), Chr.18 (8), Chr.21 (1), Chr.23 (2), Chr.26 (5), Chr.29 (1). Number of gene-based eQTL/associations: eQTL for sperm associated antigen 17 (SPAG17): Chr.3: eQTL:239900; eQTL for centrosomal protein 83 (CEP83): Chr.5: eQTL:239916; eQTL for non-SMC condensin I complex subunit D2 (NCAPD2): Chr.5: eQTL:239914; eQTL for apolipoprotein L3-like (LOC112446726): Chr.5: eQTL:239913; eQTL for family with sequence similarity 184 member B (FAM184B): Chr.6: eQTL:239921; eQTL for codanin 1 (CDAN1): Chr.10: eQTL:239922; eQTL for ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase (ABO): Chr.11: eQTL:239917; eQTL for mitogen-activated protein kinase 15 (MAPK15): Chr.14: eQTL:239918; eQTL for family with sequence similarity 83 member H (FAM83H): Chr.14: eQTL:239905; eQTL for bromodomain containing 7 (BRD7): Chr.18: eQTL:239912; eQTL for fucose kinase (FCSK): Chr.18: eQTL:239920; eQTL for somatostatin receptor 1 (SSTR1): Chr.21: eQTL:239923; eQTL for butyrophilin, subfamily 1, member A1 (BTN1A1): Chr.23: eQTL:239903; eQTL for BCL2 interacting protein 5 (BNIP5): Chr.23: eQTL:239908; eQTL for twinkle mtDNA helicase (TWNK): Chr.26: eQTL:239915; eQTL for pregnancy-associated glycoprotein 1-like (LOC536947): Chr.29: eQTL:239756; eQTL by their cis/trans acting types: cis eQTL: 239756, 239898, 239899, 239900, 239901, 239902, 239903, 239904, 239905, 239906, 239907, 239908, 239909, 239910, 239911, 239912, 239913, 239914, 239915, 239916, 239917, 239918, 239919, 239920, 239921, 239922, 239923.

Cite this Dataset:

Animal QTLdb: Dataset from van den Berg I, Hayes B J, Chamberlain A J, Goddard M E (2019). Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle. BMC Genomics, 20(1): 291; Curated into QTLdb on 2021-12-15. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=ZxTn4Y0SpC

van den Berg I, Hayes B J, Chamberlain A J, Goddard M E (2019). Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle. BMC Genomics, 20(1): 291; DOI: https://dx.doi.org/10.1186/s12864-019-5656-7

Publication # 30987590 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations:

eQTL by their cis/trans acting types: