Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of sensory characteristics traits:
19
Number of QTL / associations found:
11,586
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are sensory characteristics traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
6999.78506
29
9e-41
1.000000e-40
Chromosome 1
1469.02376
29
2.193337e-291
3.290005e-290
Chromosome 2
2144.87656
29
9e-41
1.000000e-40
Chromosome 3
550.69695
29
1.033649e-97
3.876184e-97
Chromosome 4
332.41830
29
2.938998e-53
6.782303e-53
Chromosome 5
66.62502
29
8.653198e-05
8.653198e-05
Chromosome 6
534.16657
29
2.666256e-94
8.887520e-94
Chromosome 7
85.95942
29
1.504344e-07
1.556218e-07
Chromosome 8
2363.86372
29
9e-41
1.000000e-40
Chromosome 9
1458.83995
29
3.249095e-289
3.249095e-288
Chromosome 10
181.86477
29
4.535735e-24
4.859716e-24
Chromosome 11
3129.18676
29
9e-41
1.000000e-40
Chromosome 12
2450.92324
29
9e-41
1.000000e-40
Chromosome 13
2153.10242
29
9e-41
1.000000e-40
Chromosome 14
2342.34489
29
9e-41
1.000000e-40
Chromosome 15
554.86897
29
1.420736e-98
6.088869e-98
Chromosome 16
436.55920
29
2.774421e-74
7.566603e-74
Chromosome 17
1215.75604
29
1.697156e-237
8.485780e-237
Chromosome 18
470.56445
29
3.138758e-81
9.416274e-81
Chromosome 19
382.71757
29
2.328153e-63
5.820382e-63
Chromosome 20
1425.14953
29
4.906252e-282
3.679689e-281
Chromosome 21
2517.25110
29
9e-41
1.000000e-40
Chromosome 22
2194.46751
29
9e-41
1.000000e-40
Chromosome 23
2031.36866
29
9e-41
1.000000e-40
Chromosome 24
2342.34489
29
9e-41
1.000000e-40
Chromosome 25
1510.11335
29
3.803063e-300
1.140919e-298
Chromosome 26
1262.60168
29
1.899436e-247
1.139662e-246
Chromosome 27
3890.20022
29
9e-41
1.000000e-40
Chromosome 28
2194.46751
29
9e-41
1.000000e-40
Chromosome 29
580760.51567
29
9e-41
1.000000e-40
Chi-squared (χ2) test: Which of the 19 sensory characteristics traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abnormal flavor intensity
36.53484
18
0.006021894
8.172570e-03
Abnormal odor intensity
60.77678
18
1.531544e-06
3.233260e-06
Adhesion
68.37725
18
8.487177e-08
2.015705e-07
Beef flavor intensity
43.94323
18
0.0005877754
9.306444e-04
Beef odor intensity
41.82276
18
0.001170687
1.711004e-03
Connective tissue amount
469.53491
18
2.608330e-88
1.651942e-87
Cooking loss
100.4493
18
1.832455e-13
5.802774e-13
Drip loss
34.47705
18
0.01099096
1.305176e-02
Fat luster
33.36888
18
0.01505429
1.682538e-02
Juiciness
161.71794
18
3.839819e-25
1.459131e-24
Meat firmness
57.70022
18
4.788408e-06
9.097975e-06
Meat flavor score
35.54382
18
0.008067997
1.021946e-02
Meat texture
402.00354
18
3.496756e-74
1.660959e-73
Muscle compression
24.49478
18
0.1394769
1.394769e-01
Myofibrillar fragmentation index
26.78009
18
0.08321356
8.783654e-02
Overall impression, sensory panel
45.74744
18
0.0003229058
5.577464e-04
Shear force
1206.04851
18
5.660329e-245
1.075463e-243
Tenderness score
595.54084
18
7.538207e-115
7.161297e-114
Water holding capacity
75.82794
18
4.55399e-09
1.236083e-08
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
629452.623740
Number of traits:
19
df
=
522
Number of QTLs:
11,586
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
