Cattle QTL Database

Release 56
(Apr 24, 2025)

Curator: Cari Park
Curated: 2016-11-01
Updated: 2024-04-23

Publication # 25128478 Details

Authors:	Xu L, Cole JB, Bickhart DM, Hou Y, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP, Liu GE (Contact: George.Liu@ars.usda.gov)
Affiliation:	Animal Genomics and Improvement Laboratory, BARC, USDA-ARS, Beltsville, Maryland 20705, USA
Title:	Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
Journal:	BMC Genomics, 15: 683 (2014)	DOI: 10.1186/1471-2164-15-683
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Milk yield reported for chromosome(s): Chr.4: Asso:121813. Chr.5: Asso:121810. Chr.7: Asso:121842. Chr.8: Asso:121783, Asso:121823. Chr.9: Asso:121798. Chr.10: Asso:121817. Chr.11: Asso:121806. Chr.13: Asso:121793, Asso:121838. Chr.15: Asso:121830. Chr.16: Asso:121802. Chr.21: Asso:121788. Chr.23: Asso:121853. Chr.24: Asso:121847. QTL for Milk fat yield reported for chromosome(s): Chr.4: Asso:121814. Chr.5: Asso:121811. Chr.7: Asso:121843. Chr.8: Asso:121784, Asso:121824. Chr.9: Asso:121791, Asso:121799. Chr.11: Asso:121807. Chr.13: Asso:121794, Asso:121839. Chr.15: Asso:121831. Chr.16: Asso:121803. Chr.18: Asso:121851. Chr.21: Asso:121789. Chr.23: Asso:121854. Chr.24: Asso:121848. Chr.28: Asso:121826. QTL for Milk protein yield reported for chromosome(s): Chr.4: Asso:121815. Chr.5: Asso:121812. Chr.7: Asso:121844. Chr.8: Asso:121785, Asso:121825. Chr.9: Asso:121800. Chr.13: Asso:121795, Asso:121840. Chr.16: Asso:121804. Chr.21: Asso:121790. Chr.23: Asso:121855. Chr.24: Asso:121849. Chr.27: Asso:121821. Chr.28: Asso:121827. QTL for Milk protein percentage reported for chromosome(s): Chr.1: Asso:121787, Asso:121835. Chr.3: Asso:121834. Chr.4: Asso:121816. Chr.7: Asso:121846. Chr.8: Asso:121786. Chr.9: Asso:121792, Asso:121801. Chr.10: Asso:121819. Chr.11: Asso:121809. Chr.12: Asso:121836, Asso:121837. Chr.13: Asso:121797. Chr.15: Asso:121833. Chr.16: Asso:121805. Chr.18: Asso:121852. Chr.22: Asso:121820. Chr.23: Asso:121841, Asso:121856. Chr.24: Asso:121850. Chr.28: Asso:121829. QTL for Milk fat percentage reported for chromosome(s): Chr.7: Asso:121845. Chr.10: Asso:121818. Chr.11: Asso:121808. Chr.13: Asso:121796. Chr.15: Asso:121832. Chr.27: Asso:121822. Chr.28: Asso:121828. QTL/association Reported by chromosomes: Chr.1 (2), Chr.3 (1), Chr.4 (4), Chr.5 (3), Chr.7 (5), Chr.8 (7), Chr.9 (6), Chr.10 (3), Chr.11 (4), Chr.12 (2), Chr.13 (8), Chr.15 (4), Chr.16 (4), Chr.18 (2), Chr.21 (3), Chr.22 (1), Chr.23 (5), Chr.24 (4), Chr.27 (2), Chr.28 (4). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Xu L, Cole JB, Bickhart DM, Hou Y, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP, Liu GE (2014). Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC genomics, 15: 683; Curated into QTLdb on 2016-11-01. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=OwCd0Y5GqR

Xu L, Cole JB, Bickhart DM, Hou Y, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP, Liu GE (2014). Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC genomics, 15: 683; DOI: https://dx.doi.org/10.1186/1471-2164-15-683

Publication # 25128478 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: