| QTL Map Information |
|---|
| Chromosome: | 21 |
| QTL Peak Location: | 3.70 (cM) |
| QTL Span: | 3.70-3.70 (cM)
2.9-2.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs136465345 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.21E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Brown Swiss cattle. |
| Breeds associated:
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| Design: | Animals were genotyped at various SNP densities, with data imputed to full-sequence, and analyzed for female fertility traits. After filtering, 9,748,130-9,999,287 variants were used for GWAS. |
| Analysis: | A mixed model approach was used. |
| Software: | Minimac, FImpute, EMMAX, GCTA, R software, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Frischknecht M, Bapst B, Seefried FR, Signer-Hasler H, Garrick D, Stricker C, Intergenomics Consortium, Fries R, Russ I, Sölkner J, Bieber A, Strillacci MG, Gredler-Grandl B, Flury C |
| Affiliation: | School of Agricultural, Forest and Food Sciences HAFL, Bern University of Applied Sciences, Länggasse 85, 3052, Zollikofen, Switzerland |
| Title: | Genome-wide association studies of fertility and calving traits in Brown Swiss cattle using imputed whole-genome sequences. |
| Journal: | BMC genomics, 2017, 18(1): 910 |
| Links: |
PubMed | Abstract | List all data
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