| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 67.91 (cM) |
| QTL Span: | 67.91-67.91 (cM)
74.7-74.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs467460036 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Suggestive |
 |
P_values | 0.0897 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #155406
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Canadian Holstein cattle. |
| Breeds associated:
|
| Design: | A high-throughput, genome-wide genotyping-by-sequencing method was used to identify 515,787 SNPs which were used in GWAS for milk traits. |
| Analysis: | A mixed linear model was used. |
| Software: | TASSEL, VCF Tools v0.1.8, PLINK, R 2.15.0, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ibeagha-Awemu EM, Peters SO, Akwanji KA, Imumorin IG, Zhao X |
| Affiliation: | Department of Animal Science, McGill University, 21,111 Lakeshore Road, Ste-Anne-De-Bellevue, QC, H9S 3V9 Canada |
| Title: | High density genome wide genotyping-by-sequencing and association identifies common and low frequency SNPs, and novel candidate genes influencing cow milk traits |
| Journal: | Scientific reports, 2016, 6: 31109 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #27506634
Add your comments
Note similar findings
Note contradictions
|
