| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | 56.54 (cM) |
| QTL Span: | 56.54-56.54 (cM)
47.0-47.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs132658561 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | n/a |
 |
P_values | 0.0436 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PRNP (prion protein) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | The data set consisted of 2,762 Holstein calves, 1,323 Angus,85 Red Angus, 66 Hereford, 118 Charolais, and 408 crossbred beef cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the BovineHD BeadChip and suceptibility to bovine respiratory disease. A marker was selected as a proxy for each gene within the bovine genome. The final analysis included markers as proxies for 19,723 genes within 3,147 gene sets. |
| Analysis: | Gene-set enrhciment anlaysis utilitzing SNP data was used. Dairy and beef cattle were analyzed seperately. Individual dairy populations (California and New Mexico) were analyzed both sperately and jointly, while individual beef populations (Colorado and Washington) were analyzed seperately. |
| Software: | Golden Helix SNP and Variation Suite (SVS), R - GenAbel |
| Notes: | This study used some data that were previously analyzed (PMID 25534905). |
| Links: | Edit |
| Reference |
|---|
| Authors: | Neupane M, Kiser JN, the Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team, Neibergs HL |
| Affiliation: | Department of Animal Sciences, Washington State University, Pullman WA 99164; Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station TX 77843 |
| Title: | Gene set enrichment analysis of SNP data in dairy and beef cattle with bovine respiratory disease. |
| Journal: | Animal Genetics, 2018, 49(6):527-538 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | Proxy for PRNP in the Combined Beef data |
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