| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 49.63 (cM) |
| QTL Span: | 49.63-49.63 (cM)
44.9-44.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs132745273 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ANAPC4 (anaphase promoting complex subunit 4) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were 2109 Hanwoo steers. |
| Breeds associated:
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| Design: | Animals were genotyped using either the Illumina BovineSNP50 or BovineHD BeadChip, with data imputed to sequence level, and analyzed for meat quality and carcass traits. A total of 11,278,153 SNPs were retained for analysis. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | Eagle, Minimac3, SNPEff v.4.3, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Bhuiyan MSA, Lim D, Park M, Lee S, Kim Y, Gondro C, Park B, Lee S |
| Affiliation: | Department of Animal Science and Biotechnology, Chungnam National University, Daejeon, South Korea |
| Title: | Functional Partitioning of Genomic Variance and Genome-Wide Association Study for Carcass Traits in Korean Hanwoo Cattle Using Imputed Sequence Level SNP Data |
| Journal: | Frontiers in genetics, 2018, 9: 217 |
| Links: |
PubMed | Abstract | List all data
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