| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 123.75 (cM) |
| QTL Span: | 123.75-123.75 (cM)
112.3-112.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs383553819 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.1% | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nordic Holstein, Nordic Red, and Jersey cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineSNP50 or BovineHD BeadChip, with data imputed to whole-genome sequence level, and analyzed for milk production and mastitis traits. |
| Analysis: | A two-step variance component-based approach was used. |
| Software: | IMPUTE2, Minimac2, EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Fang L, Sahana G, Su G, Yu Y, Zhang S, Lund MS, Sørensen P |
| Affiliation: | Center for Quantitative Genetics and Genomics, Department of Molecular Biology and Genetics, Aarhus University, 8830 Tjele, Denmark |
| Title: | Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle |
| Journal: | Scientific reports, 2018, 7: 45560 |
| Links: |
PubMed | Abstract | List all data
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