| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
3.9-3.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109230014 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | -0.01 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #175004
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were US Holstein cattle. |
| Breeds associated:
|
| Design: | Cows had genotypes for 60,671 SNPs imputed from 18 SNP chips with 2,710 to 60,671 original SNPs. GWAS was performed for production and fertility traits and somatic cell score. |
| Analysis: | Two methods were used, an approximate generalized least squares analysis, and a Bayesian linear mixed model. |
| Software: | BOLT-LMM, EPISNP1mpi, SNPEVG |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jiang J, Ma L, Prakapenka D, VanRaden PM, Cole JB, Da Y |
| Affiliation: | Department of Animal Science, University of Minnesota, Saint Paul, MN, United States |
| Title: | A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle |
| Journal: | Frontiers in genetics, 2019, 10: 412 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | significant additive SNP effects |
User inputs on reference #31139206
Add your comments
Note similar findings
Note contradictions
|
