Release 56
(Apr 24, 2025)

QTL 178544 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: (n/a) Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:14
QTL Peak Location:51.20 (cM)
QTL Span:50.48-51.92 (cM)
37.6-38.7 (Mbp)
Upper, "Suggestive":rs41731303
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":rs41629306
Marker type:SNP
Analysis type:QTL
Model tested:Mendelian
Test base:n/a
Threshold significance level:Suggestive
VARIANCE0.3%
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Ayrshire, Holstein, and Jersey dairy cattle.
     Breeds associated:
    Design:Animals were genotyped with or imputed to the Illumina BovineSNP50 BeadChip and analyzed for milk production traits at three different stages of each of the first three lactations.
    Analysis:Genomic best linear unbiased prediction and single-trait random regression test-day models were used.
    Software:postGsf90, PLINK
    Notes: 
    Links:Edit

     Reference
    Authors:Oliveira H R, Cant J P, Brito L F, Feitosa F L B, Chud T C S, Fonseca P A S, Jamrozik J, Silva F F, Lourenco D A L, Schenkel F S
    Affiliation:Centre for Genetic Improvement of Livestock (CGIL), Department of Animal Biosciences, University of Guelph, Guelph, Ontario, N1G 2W1, Canada
    Title:Genome-wide association for milk production traits and somatic cell score in different lactation stages of Ayrshire, Holstein, and Jersey dairy cattle
    Journal:Journal of dairy science, 2019, 102(9): 8159-8174
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:First parity, 5-95 DIM
    User inputs on reference #31301836
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  • Cite this Data:

    Animal QTLdb: QTL178544 was published in 2019, and was curated into QTLdb on 2019-09-10. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:178544

     

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