Release 56
(Apr 24, 2025)

QTL 19042 Description:

 Trait Information
Trait name: Somatic cell score Vertebrate Trait Ontology: Milk somatic cell quantity
Reported name: Somatic cell score (DYD) Product Trait Ontology: Milk somatic cell count
Symbol: SCS Clinical Measurement Ontology: Milk somatic cell score
 QTL Map Information
Chromosome:21
QTL Peak Location:41.81 (cM)
QTL Span:41.81-41.81 (cM)
33.2-33.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs29016404
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
LikelihoodR25.12
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Norwegian Red cattle.
     Breeds associated:
    Design:Sires were genotyped for 17,349 SNPs using the Affymetrix 25K MIP array and analyzed for DYDs for clinical mastitis and somatic cell score.
    Analysis:Mixed models were used.
    Software:CRIMAP, PHASE, GRIDQTL, ASREML
    Notes: 
    Links:Edit

     Reference
    Authors:Sodeland M, Kent MP, Olsen HG, Opsal MA, Svendsen M, Sehested E, Hayes BJ, Lien S
    Affiliation:Department of Animal and Aquacultural Sciences, Centre for Integrative Genetics, Norwegian University of Life Sciences, N-1432 Aas, Norway
    Title:Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle.
    Journal:Animal genetics, 2011, 42(5): 457-65
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:DYD
    User inputs on reference #21906097
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  • Cite this Data:

    Animal QTLdb: QTL19042 was published in 2011, and was curated into QTLdb on 2012-12-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:19042

     

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