| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 99.68 (cM) |
| QTL Span: | 99.68-99.68 (cM)
71.9-71.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs463412345 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.83E-12 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #215622
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Cattle were from 9 populations, comprised of the following breeds: Holstein, Jersey, Australian Red, Monbeliarde, Normande, Norwegian Red, Braunvieh, and Fleckvieh. |
| Breeds associated:
|
| Design: | A meta-analysis was performed on the data from nine within-population GWAS for milk fat and protein percentage. The GWAS included imputed sequence variant genotypes of 94,321 individuals. |
| Analysis: | Within-population GWAS were carried out by single-SNP regressions using mixed linear models. Meta-analysis was based on a weighted Z-scores model. |
| Software: | Minimac3, Minimac4, FImpute, GCTA, METAL, EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | van den Berg I, Xiang R, Jenko J, Pausch H, Boussaha M, Schrooten C, Tribout T, Gjuvsland AB, Boichard D, Nordbø Ø, Sanchez MP, Goddard ME |
| Affiliation: | Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, VIC, 3010, Australia |
| Title: | Meta-analysis for milk fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight cattle breeds |
| Journal: | Genetics, Selection, Evolution : GSE, 2020, 52(1): 37 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #32635893
Add your comments
Note similar findings
Note contradictions
|
