| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
105.3-105.3 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs210788783 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | n/a |
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P_values | 0.0008999 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | This dataset consisted of 48 Jersey cattle and 245 Holstein cattle. |
| Breeds associated:
n/a
|
| Design: | Fine mapping of a region on BTA3 using custom genotyping array, additional functional assays including EMSA and Luciferase assays were done on significant SNP.
|
| Analysis: | Animals were genotyped using a custom 96-SNP genotyping array and genotypes were called using the Illumina BeadStudio software.
|
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jennifer N. Kiser, Zeping Wang, Ricardo Zanella, Erik Scraggs, Mahesh Neupane, Bonnie Cantrell, Curtis P. Van Tassell, Stephen N. White, Jeremy F. Taylor, Holly L. Neibergs |
| Affiliation: | Washington State University |
| Title: | Functional variants surrounding endothelin 2 are associated with Mycobacterium avium subspecies paratuberculosis infection |
| Journal: | Frontiers in Veterinary Science, 2021, 8:625323 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | SNP78 |
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