| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
37.4-37.4 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs208932260 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.01517E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | LCORL (ligand dependent nuclear receptor corepressor-like) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Chinese Simmental beef cattle. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina BovineHD BeadChip, with data imputed to whole genome sequence, and GWAS was performed for bone weight. A total of 12,102,431 SNPs were used for analysis. |
| Analysis: | GWAS was performed using a mixed linear model. Candidate region fine mapping was carried out using a Bayesian analysis. |
| Software: | GCTA v1.93.1, PLINK v1.9, BFMAP |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Niu Q, Zhang T, Xu L, Wang T, Wang Z, Zhu B, Gao X, Chen Y, Zhang L, Gao H, Li J, Xu L |
| Affiliation: | Key Laboratory of Animal Genetics Breeding and Reproduction, Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China |
| Title: | Identification of Candidate Variants Associated With Bone Weight Using Whole Genome Sequence in Beef Cattle |
| Journal: | Frontiers in Genetics, 2021, 12: 750746 |
| Links: |
PubMed | Abstract | List all data
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