| QTL Map Information |
|---|
| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs524832799 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Suggestive |
 |
FDR | 9.22E-02 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CBFA2T3 (CBFA2/RUNX1 partner transcriptional co-repressor 3) |
| Cis/Trans acting type: | Cis  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #258310
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nelore cattle. |
| Breeds associated:
n/a
|
| Design: | All animals were genotyped using the Illumina BovineHD BeadChip, while sires were subjected to whole-genome sequencing. HD genotypes were imputed, and 4,813,664 SNPs were used for association analysis on feed efficiency traits. |
| Analysis: | Univariate mixed models were used for association analysis between 1) SNPs and mRNA expression data to investigate cis-regulatory effects on gene expression, and 2) SNPs and feed efficiency-related traits. |
| Software: | Eagle, Minimac3, PLINK, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cardoso TF, Bruscadin JJ, Afonso J, Petrini J, Andrade BGN, de Oliveira PSN, Malheiros JM, Rocha MIP, Zerlotini A, Ferraz JBS, Mourão GB, Coutinho LL, Regitano LCA |
| Affiliation: | Embrapa Southeast Livestock, São Carlos, SP, Brazil |
| Title: | EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle |
| Journal: | Mammalian genome, 2022, 33(4):619-628 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #35816191
Add your comments
Note similar findings
Note contradictions
|
