| QTL Map Information |
|---|
| Chromosome: | 23 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | rs481780034 |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | rs135053184 |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Suggestive |
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VARIANCE | 0.489% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD and GGP F-250 BeadChips, with data imputed to full genome sequence, and GWAS was performed for susceptibility to MAP infection. A total of 343,705 SNPs were used for analysis. |
| Analysis: | Single-step GWAS was performed using an additive model. |
| Software: | Beagle 5.1, PLINK 1.9, FImpute v.3, BLUPF90, qvalue in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Kirkpatrick B W, Cooke M E, Frie M, Sporer K R B, Lett B, Wells S J, Coussens P M |
| Affiliation: | Department of Animal and Dairy Sciences, University of Wisconsin-Madison, 1675 Observatory Drive, Madison 53706 |
| Title: | Genome-wide association analysis for susceptibility to infection by Mycobacterium avium ssp. paratuberculosis in US Holsteins |
| Journal: | Journal of dairy science, 2022, 105(5): 4301-4313 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | sire analysis |
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