| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 19.32 (cM) |
| QTL Span: | 19.32-19.32 (cM)
20.7-20.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41604735 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | LOC101905904 (uncharacterized LOC101905904) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Chinese Holstein cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for body conformation traits. A total of 52166 SNPs were used for analysis. |
| Analysis: | GWAS was carried out in two steps. First, single-trait mixed model analysis was performed; then, the first 500 markers with the lowest p-values were used for multiple-SNP analysis. |
| Software: | |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wu X, Fang M, Liu L, Wang S, Liu J, Ding X, Zhang S, Zhang Q, Zhang Y, Qiao L, Lund MS, Su G, Sun D |
| Affiliation: | Key Laboratory of Animal Genetics and Breeding of Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, 2 Yuanmingyuan West Road, Beijin |
| Title: | Genome wide association studies for body conformation traits in the Chinese Holstein cattle population |
| Journal: | BMC genomics, 2013, 14: 897 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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