| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
115.7-115.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41578131 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.00004 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Native Cattle of Guilan in Iran. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina 50K Bovine SNP BeadChip, and GWAS were performed for abdomen depth, head width, hip width, and withers height. A total of 41,917 SNPs were used for analysis. |
| Analysis: | The following model was considered for association analysis:
y = Xb + Zu + e, where y is the vector of phenotypic records, b denotes the fixed effects of SNPs with association matrix X, u is the vector of the random polygenic effect of the individual with the incidence matrix Z, and e denotes the vector of random residual effects. |
| Software: | PLINK v9.1 beta, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jourshari MG, Shadparvar AA, Ghavi Hossein-Zadeh N, Rafeie F, Banabazi MH, Johansson AM |
| Affiliation: | Department of Animal Science, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran |
| Title: | Genome-wide association study on abdomen depth, head width, hip width, and withers height in native cattle of Guilan (Bos indicus) |
| Journal: | PLoS One, 2023, 18: e0289612 |
| Links: |
PubMed | Abstract | List all data
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