Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of feeding traits:
6
Number of QTL / associations found:
1,392
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are feeding traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
153.12498
28
3.363033e-19
8.866178e-19
Chromosome 1
10585.12500
28
9e-41
8.700000e-40
Chromosome 2
120.12498
28
2.219566e-13
3.575967e-13
Chromosome 3
648.00000
28
1.409676e-118
4.088060e-117
Chromosome 4
6498.00000
28
9e-41
8.700000e-40
Chromosome 5
18.00000
28
0.9261492
9.983293e-01
Chromosome 6
24.49998
28
0.6548922
7.596750e-01
Chromosome 7
3.12498
28
0.998329325823115
9.983293e-01
Chromosome 8
45.12498
28
0.02142763
2.701745e-02
Chromosome 9
3.12498
28
0.998329325823115
9.983293e-01
Chromosome 10
28.12500
28
0.4578383
5.532213e-01
Chromosome 11
84.49998
28
1.400328e-07
1.845887e-07
Chromosome 12
15.12498
28
0.9770863
9.983293e-01
Chromosome 13
120.12498
28
2.219566e-13
3.575967e-13
Chromosome 14
97.99998
28
1.065837e-09
1.545464e-09
Chromosome 15
97.99998
28
1.065837e-09
1.545464e-09
Chromosome 16
253.12500
28
4.139337e-38
2.400815e-37
Chromosome 17
153.12498
28
3.363033e-19
8.866178e-19
Chromosome 18
241.99998
28
6.04211e-36
2.920353e-35
Chromosome 19
127.99998
28
9.722073e-15
1.762126e-14
Chromosome 20
127.99998
28
9.722073e-15
1.762126e-14
Chromosome 21
84.49998
28
1.400328e-07
1.845887e-07
Chromosome 22
253.12500
28
4.139337e-38
2.400815e-37
Chromosome 23
136.12500
28
3.669657e-16
7.601432e-16
Chromosome 24
144.49998
28
1.195212e-17
2.888429e-17
Chromosome 25
162.00000
28
8.184065e-21
2.637088e-20
Chromosome 26
162.00000
28
8.184065e-21
2.637088e-20
Chromosome 27
180.49998
28
3.148408e-24
1.304340e-23
Chromosome 28
136.12500
28
3.669657e-16
7.601432e-16
Chi-squared (χ2) test: Which of the 6 feeding traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Dry matter digestibility
76.0909
5
5.506763e-15
8.260145e-15
Dry matter intake
61.36395
5
6.349366e-12
7.619239e-12
Feed conversion ratio
109.95044
5
4.197343e-22
8.394686e-22
Feed efficiency
3.1062
5
0.6836169
6.836169e-01
Feed intake
158.67392
5
1.897396e-32
5.692188e-32
Residual feed intake
529.6484
5
3.173724e-112
1.904234e-111
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
20705.249640
Number of traits:
6
df
=
140
Number of QTLs:
1,392
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
