| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
0.2-0.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs317288151 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from an F2 population of White Leghorn x Dongxiang Blue-Shelled chicken. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Affymetrix 600K Axiom Chicken Genotyping Array and analyzed for comb size traits. A total of 435,867 SNPs were used for analysis. |
| Analysis: | Genome-wide efficient mixed-model association (GEMMA) with an efficient exact mixed model approach was used. |
| Software: | GenABEL in R, PLINK, BEAGLE, GEMMA v0.94, Haploview, SAS, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shen M, Qu L, Ma M, Dou T, Lu J, Guo J, Hu Y, Yi G, Yuan J, Sun C, Wang K, Yang N |
| Affiliation: | National Engineering Laboratory for Animal Breeding and MOA Key Laboratory of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China |
| Title: | Genome-Wide Association Studies for Comb Traits in Chickens |
| Journal: | PloS one, 2016, 11(7): e0159081 |
| Links: |
PubMed | Abstract | List all data
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