| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
64.2-64.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs315155735 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #158702
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | An F2 resource population was derived from a cross between White Leghorn and Dongxiang chickens. |
| Breeds associated:
|
| Design: | Birds were genotyped using the 600K Affymetrix Axiom Chicken Genotyping Array and analyzed for eggshell ultrastructure traits. A total of 434,442 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used. |
| Software: | PLINK, GEMMA, Beagle, GenABEL in R, GCTA, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Duan Z, Sun C, Shen MM, Wang K, Yang N, Zheng J, Xu G |
| Affiliation: | National Engineering Laboratory for Animal Breeding and MOA Key Laboratory of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China |
| Title: | Genetic architecture dissection by genome-wide association analysis reveals avian eggshell ultrastructure traits |
| Journal: | Scientific reports, 2018, 6: 28836 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #27456605
Add your comments
Note similar findings
Note contradictions
|
