| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
58.7-58.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs731858546 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.72E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were New Pudong chickens, a Chinese indigenous breed. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped for 1,527,953 SNPs and analyzed for incidence of pullorum disease. A total of 314,562 SNPs were used for analysis. |
| Analysis: | GWAS was performed using a logistic regression analysis on healthy/infected phenotype. |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Xiao L, He C, Luo L, Yang K, Yang L, Xu K, Zheng Y, Gu C, Huang Q, Meng H |
| Affiliation: | Shanghai Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, 200240, Shanghai, China |
| Title: | Genome-wide association study identified genes in the response to Salmonella pullorum infection in chickens |
| Journal: | Animal genetics, 2019, 50(4):403-406 |
| Links: |
PubMed | Abstract | List all data
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