| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | n/a
36.3-36.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs16492034 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.04598 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | RALGAPA1 (Ral GTPase activating protein, alpha subunit 1 (catalytic)) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Ningdu Sanhuang chickens. |
| Breeds associated:
n/a
|
| Design: | Suppressive subtractive hybridization, GWAS, and gene-centric GWAS were performed to identify genes related to chicken reproductive traits. |
| Analysis: | In the GWAS, chi-square tests were performed for each SNP. |
| Software: | PLINK, Haploview, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Shen X, Zeng H, Xie L, He J, Li J, Xie X, Luo C, Xu H, Zhou M, Nie Q, Zhang X |
| Affiliation: | Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China |
| Title: | The GTPase activating Rap/RanGAP domain-like 1 gene is associated with chicken reproductive traits |
| Journal: | PLoS One, 2012, 7(4):e33851 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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