| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
165.0-166.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs313237711 |
| Peak: | |
| Lower, "Significant": | rs13967472 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.81% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from local breeder chickens in three ecological zones in Ghana. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Affymetrix Axiom 600k Array and analyzed for response to infection with Newcastle Disease Virus. A total of 403,165 SNPs were used for analysis. |
| Analysis: | Two methods were used for GWAS: a Bayes B method using 1-Mb windows and a hierarchical generalized linear model for single-SNP analyses. |
| Software: | FImpute, PLINK, ASReml 4, GenSel, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Walugembe M, Amuzu-Aweh EN, Botchway PK, Naazie A, Aning G, Wang Y, Saelao P, Kelly T, Gallardo RA, Zhou H, Lamont SJ, Kayang BB, Dekkers JCM |
| Affiliation: | Feed the Future Innovation Lab for Genomics to Improve Poultry, Department of Animal Science, University of California, Davis, Davis, CA, United States |
| Title: | Genetic Basis of Response of Ghanaian Local Chickens to Infection With a Lentogenic Newcastle Disease Virus |
| Journal: | Frontiers in genetics, 2020, 11: 739 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 10 dpi |
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