| QTL Map Information |
|---|
| Chromosome: | 24 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
0.4-0.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs314803280 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.25E-9 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from three popular Tanzanian chicken ecotypes: Ching'wekwe (Ching), Kuchi, and Morogoro Medium (MoroMid). |
| Breeds associated:
n/a
|
| Design: | Chickens were genotyped using the Affymetrix Axiom 600k Array and analyzed for response to infection with Newcastle Disease Virus. A total of 396,055 SNPs were used for analysis. |
| Analysis: | Two methods were used for GWAS: a Bayes B method using 1-Mb windows and a hierarchical generalized linear model for single-SNP analyses. |
| Software: | PLINK, FImpute, ASReml 4, GenSel, GenABEL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Walugembe M, Mushi JR, Amuzu-Aweh EN, Chiwanga GH, Msoffe PL, Wang Y, Saelao P, Kelly T, Gallardo RA, Zhou H, Lamont SJ, Muhairwa AP, Dekkers JCM |
| Affiliation: | Department of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA 50011, USA |
| Title: | Genetic Analyses of Tanzanian Local Chicken Ecotypes Challenged with Newcastle Disease Virus |
| Journal: | Genes, 2019, 10(7):546 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 6 dpi |
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