| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs316696861 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 1.79E-02 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | BG1 (BG-like antigen 1) |
| Cis/Trans acting type: | cis  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from an outbred purebred commercial broiler line from the Aviagen breeding program. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using a proprietary 50K SNP array, with data imputed to the 600K Affymetrix Axiom HD array, and analyzed for cecal Campylobacter colonization. |
| Analysis: | GWAS was performed using a standard univariate linear mixed model. |
| Software: | AlphaImpute, PLINK v1.09, ASReml v4.0, GenABEL in R, GEMMA v0.98.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, Kaiser P, Stevens MP |
| Affiliation: | The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK |
| Title: | Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter |
| Journal: | Scientific reports, 2021, 11(1): 1623 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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