| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
15.5-15.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs314702374 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | MPHOSPH6 (M-phase phosphoprotein 6) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were indigenous chickens in Rwanda. |
| Breeds associated:
n/a
|
| Design: | GWAS was performed for antibody response to Newcastle Disease Virus vaccine. A genotyping-by-sequencing approach was employed, and 65,945 independent SNPs were used for analysis. |
| Analysis: | Mixed linear models were used. |
| Software: | SAMtools v1.3.1, PLINK v1.07, Tassel 5.2.60, qqman in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Habimana R, Ngeno K, Okeno TO, Hirwa CA, Keambou Tiambo C, Yao NK |
| Affiliation: | College of Agriculture, Animal Science and Veterinary Medicine, University of Rwanda, Kigali, Rwanda |
| Title: | Genome-Wide Association Study of Growth Performance and Immune Response to Newcastle Disease Virus of Indigenous Chicken in Rwanda |
| Journal: | Frontiers in Genetics, 2021, 12: 723980 |
| Links: |
PubMed | Abstract | List all data
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