| QTL Map Information |
|---|
| Chromosome: | Z |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
85.2-85.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs15990880 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SNCAIP (synuclein alpha interacting protein) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from an Ogye x White Leghorn F2 chicken population. |
| Breeds associated:
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| Design: | Bird were genotyped using the Illumina 60K chicken SNP chip, and GWAS was performed for skin color. A total of 45,608 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | PLINK 1.9, GCTA, ADMIXTURE |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cha J, Jin D, Kim JH, Kim SC, Lim JA, Chai HH, Jung SA, Lee JH, Lee SH |
| Affiliation: | Animal Genome & Bioinformatics, National Institute of Animal Science, Rural Development Administration, Wanju 55365, South Korea |
| Title: | Genome-wide association study revealed the genomic regions associated with skin pigmentation in an Ogye x White Leghorn F2 chicken population |
| Journal: | Poultry Sci, 2023, 102(8): 102720 |
| Links: |
PubMed | Abstract | List all data
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