| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | - |
| Test base: | - |
| Threshold significance level: | Significant |
 |
VARIANCE | 20.6% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Birds were indigenous chickens in Ghana representing the forest, interior savannah, and coastal savannah ecotypes. |
| Breeds associated:
n/a
|
| Design: | Chickens were genotyped using a 5K genotyping-by-sequencing panel, with data imputed to 382,240 SNPs that remained after quality control of high-density genotyped data from relatives using the Affymetrix Axiom 600K SNP chip. GWAS were performed for body weight, carcass, and internal organ traits. |
| Analysis: | The Bayes B method was used. |
| Software: | FImpute, ASReml 4, JWAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Kanlisi RA, Amuzu-Aweh EN, Naazie A, Otsyina HR, Kelly TR, Gallardo RA, Lamont SJ, Zhou H, Dekkers J, Kayang BB |
| Affiliation: | Department of Animal Science, University of Ghana, Accra, Ghana |
| Title: | Genetic architecture of body weight, carcass, and internal organs traits of Ghanaian local chickens |
| Journal: | Frontiers in Genetics, 2024, 15: 1297034 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Model 1 (without BW22 as covariate) |
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