| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
135.2-136.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | QTL |
| Model tested: | - |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 0.02867 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from the two-way crossing of Iranian native Urmia chickens with Arian commercial meat lines. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Illumina 60K BeadChip, and identified CNV regions were analyzed for association with shank measurement traits. A total of 48,439 SNPs were used for analysis. |
| Analysis: | The generalized linear model was used. |
| Software: | PLINK v1.07, PENNCNV v1.0.5, CNVRULER, CNVRANGER R/BIOCONDUCTOR |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lotfizadeh F, Masoudi AA, Vaez Torshizi R, Emrani H |
| Affiliation: | Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran. |
| Title: | Genome-wide association study of copy number variations with shank traits in a F2 crossbred chicken population. |
| Journal: | Animal Genetics, 2024, 55(4):559-574 |
| Links: |
PubMed | Abstract | List all data
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