Release 56
(Apr 24, 2025)

QTL 307272 Description:

 Trait Information
Trait name: Shank circumference Vertebrate Trait Ontology: Tarsometatarsus circumference
Trait details: shank circumference at 18 weeks Product Trait Ontology: n/a
Symbol: SHCIRC Clinical Measurement Ontology: Distal forelimb circumference
 QTL Map Information
Chromosome:4
QTL Peak Location:n/a
QTL Span:n/a
74.6-74.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs80694678
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:n/a
Test base:Genome-wise
Threshold significance level:Significant
P_values<0.05
Dominance effect:n/a
Additive effect:n/a
Associated Gene:SLIT2 (slit guidance ligand 2)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Birds were Wensheng Barred, Recessive White, and Luxi Mini chickens.
     Breeds associated:
    n/a
    Design:Chickens were subjected to whole-genome sequencing, and GWAS were performed for body weight and size traits.
    Analysis:Linear mixed models were used.
    Software:GEMMA v0.98.4, PLINK v1.9, SPSS 25.0
    Notes: 
    Links:Edit

     Reference
    Authors:Wang J, Liu J, Lei Q, Liu Z, Han H, Zhang S, Qi C, Liu W, Li D, Li F, Cao D, Zhou Y
    Affiliation:Poultry Breeding Engineering Technology Center of Shandong Province, Poultry Institute, Shandong Academy of Agricultural Sciences, Jinan, Shandong, 250023, China
    Title:Elucidation of the genetic determination of body weight and size in Chinese local chicken breeds by large-scale genomic analyses
    Journal:BMC Genomics, 2024, 25(1): 296
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #38509464
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  • Cite this Data:

    Animal QTLdb: QTL307272 was published in 2024, and was curated into QTLdb on 2024-11-04. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:307272

     

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