| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
30.7-30.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs316505750 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.91E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Nandan-Yao chickens. |
| Breeds associated:
n/a
|
| Design: | Chickens subjected to whole-genome sequencing and GWAS were performed for comb traits. A total of 9,080,580 SNPs and 684,401 indels were used for analysis. |
| Analysis: | A univariate linear mixed model was used. |
| Software: | SAMtools v1.3.1, PLINK v1.90, VCFtools v0.1.17, BIMBAM v1.0, GEMMA v0.96, CMplot in R v3.6.2, GCTA v1.26 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yang Z, Zou L, Sun T, Xu W, Zeng L, Jia Y, Jiang J, Deng J, Yang X |
| Affiliation: | College of Animal Science and Technology, Guangxi University, Nanning, China |
| Title: | Genome-Wide Association Study Using Whole-Genome Sequencing Identifies a Genomic Region on Chromosome 6 Associated With Comb Traits in Nandan-Yao Chicken |
| Journal: | Frontiers in Genetics, 2021, 12: 682501 |
| Links: |
PubMed | Abstract | List all data
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