| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs313689037 |
| Peak: | |
| Lower, "Significant": | rs13972099 |
| Lower, "Suggestive": | n/a |
| Marker type: | Haplotype |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 1.320E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | An advanced intercross line was generated by crossing High Quality Chicken Line A (cross between Anak Broiler and a Chinese chicken line) with Huiyang Bearded Chicken. |
| Breeds associated:
n/a
|
| Design: | Birds were subjected to genotyping by sequencing and standard GWAS, haplotype-based GWAS, and ancestral-haplotype-based GWAS were performed for body weight. |
| Analysis: | Mixed linear models were used. |
| Software: | VCFtools v0.1.16, TASSEL v5.2.31, Beagle 5.0, SHAPEIT 2.0, GTOOL, RFMix, GCTA, lme4QTL in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Bu L, Wang Y, Tan L, Wen Z, Hu X, Zhang Z, Zhao Y |
| Affiliation: | State Key Laboratory of Animal Biotech Breeding, College of Biological Sciences, China Agricultural University, Beijing, China |
| Title: | Haplotype analysis incorporating ancestral origins identified novel genetic loci associated with chicken body weight using an advanced intercross line |
| Journal: | Genetics, Selection, Evolution : GSE, 2024, 56(1): 78 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | Ancestral haplotype |
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