Release 56
(Apr 24, 2025)

Whole genome analysis for QTL/association enrichment

Running...
Version: Enrich S: beta v0.8
Search: to limit the list of your trait choices:
(optional) focus on chromosome with Mb windows across its length

Data:

Number of fleece traits:7
Number of QTL / associations found:216
Number of chromosomes where QTL / associations are found:26

Chi-squared (χ2) test: are fleece traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome 1157.96865252.820453e-213.666589e-20
Chromosome 263.66311253.21056e-052.782485e-04
Chromosome 3157.96865252.820453e-213.666589e-20
Chromosome 40.40383250.9983293258231159.999982e-01
Chromosome 59.21865250.99828219.999982e-01
Chromosome 637.73721250.049064963.189222e-01
Chromosome 715.63534250.92525639.999982e-01
Chromosome 81.44088250.9983293258231159.999982e-01
Chromosome 911.48721250.99023369.999982e-01
Chromosome 106.10757250.99995939.999982e-01
Chromosome 1111.48721250.99023369.999982e-01
Chromosome 121.44088250.9983293258231159.999982e-01
Chromosome 139.21865250.99828219.999982e-01
Chromosome 1433.52419250.11847584.400530e-01
Chromosome 150.07980250.9983293258231159.999982e-01
Chromosome 1615.63534250.92525639.999982e-01
Chromosome 171.44088250.9983293258231159.999982e-01
Chromosome 180.07980250.9983293258231159.999982e-01
Chromosome 1923.73721250.53459649.999982e-01
Chromosome 204.48721250.99999829.999982e-01
Chromosome 219.21865250.99828219.999982e-01
Chromosome 229.21865250.99828219.999982e-01
Chromosome 2323.73721250.53459649.999982e-01
Chromosome 2433.52419250.11847584.400530e-01
Chromosome 2518.55196250.81808219.999982e-01
Chromosome 2633.52419250.11847584.400530e-01

Chi-squared (χ2) test: Which of the 7 fleece traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Clean fleece weight 49.51569 6 5.878245e-09 2.057386e-08
Face wool score 33.23531 6 9.447291e-06 1.322621e-05
Fleece yield 43.42701 6 9.601165e-08 1.680204e-07
Greasy fleece weight 24.22397 6 0.0004749604 5.278369e-04
Staple length 23.97491 6 0.0005278369 5.278369e-04
Staple strength 69.10516 6 6.238223e-13 4.366756e-12
Wool crimp 46.77857 6 2.071382e-08 4.833225e-08

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:26 χ2=690.537120
Number of traits:7 df=150
Number of QTLs:216 p-value=2.885126e-70

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team