| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs3029932771 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 2.00% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Fish were rainbow trout from a growth-selected line. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using a newly built Affymetrix 50K SNP chip and analyzed for muscle yield. Approximately 45K SNPs were used for analysis. |
| Analysis: | Weighted single-step GBLUP was used to perform GWAS. |
| Software: | BLUPF90, AIREMLF90, qqman in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Salem M, Al-Tobasei R, Ali A, Lourenco D, Gao G, Palti Y, Kenney B, Leeds TD |
| Affiliation: | National Center for Cool and Cold Water Aquaculture, USDA Agricultural Research Service, Kearneysville, WV, United States |
| Title: | Genome-Wide Association Analysis With a 50K Transcribed Gene SNP-Chip Identifies QTL Affecting Muscle Yield in Rainbow Trout |
| Journal: | Frontiers in genetics, 2018, 9: 387 |
| Links: |
PubMed | Abstract | List all data
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