| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs3029920501 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 2.20% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | c2h12orf29 (chromosome 2 C12orf29 homolog) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Fish were from two consecutive generations of rainbow trout produced from the NCCCWA growth-selection breeding program. |
| Breeds associated:
n/a
|
| Design: | Fish were genotyped using an Affymetrix 50K transcribed gene SNP chip and analyzed for body weight gain. |
| Analysis: | Weighted single-step GBLUP was used to perform GWAS using 50-SNP windows. Single-marker GWAS was performed using family-based analysis using permutations and a generalized score test. |
| Software: | QFAM in PLINK, POSTGSF90, AIREMLF90, qqman in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ali A, Al-Tobasei R, Lourenco D, Leeds T, Kenney B, Salem M |
| Affiliation: | Department of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA |
| Title: | Genome-wide identification of loci associated with growth in rainbow trout |
| Journal: | BMC genomics, 2020, 21(1): 209 |
| Links: |
PubMed | Abstract | List all data
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