| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs3029813657 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 3.304% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Fish were from the NCCWA selective breeding program, established by intercrossing seven domesticated strains of rainbow trout and selecting for improved growth performance. |
| Breeds associated:
n/a
|
| Design: | Fish were genotyped using a 50K transcribed gene SNP chip and analyzed for intramuscular fat and moisture content. A total of 35,322 SNPs were used for analysis. |
| Analysis: | SNP effects were estimated using weighted single-step GBLUP. |
| Software: | AIREMLF90, PREGSF90, POSTGSF90, PLINK, ONETOOL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ali A, Al-Tobasei R, Lourenco D, Leeds T, Kenney B, Salem M |
| Affiliation: | Department of Animal and Avian Sciences, University of Maryland, College Park, MD, 20742, USA |
| Title: | Genome-wide scan for common variants associated with intramuscular fat and moisture content in rainbow trout |
| Journal: | BMC genomics, 2020, 21(1): 529 |
| Links: |
PubMed | Abstract | List all data
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