| QTL Map Information |
|---|
| Chromosome: | 25 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
23.5-23.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.0E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Rainbow trout were from five consecutive generations of a Troutlodge, Inc. spawning strain. |
| Breeds associated:
n/a
|
| Design: | A set of SNPs in previously identified QTL regions for BCWD resistance were genotyped and used in a BCWD association analysis to validate SNPs associated with disease resistance and refine haplotypes. |
| Analysis: | SNP and haplotype association with BCWD resistance were evaluated using family-based association mapping. |
| Software: | SAMtools v1.11, Picard v2.18.2, freebayes v1.3.1, SnpEff v4.3, VCFtools v0.1.16, PLINK 1.9 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Liu S, Martin KE, Gao G, Long R, Evenhuis JP, Leeds TD, Wiens GD, Palti Y |
| Affiliation: | National Center for Cool and Cold Water Aquaculture, Agricultural Research Service, United States Department of Agriculture, Kearneysville, WV, United States |
| Title: | Identification of Haplotypes Associated With Resistance to Bacterial Cold Water Disease in Rainbow Trout Using Whole-Genome Resequencing |
| Journal: | Frontiers in Genetics, 2022, 13: 936806 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 2015 generation |
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