Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of chemistry traits:
24
Number of QTL / associations found:
803
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are chemistry traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
391.69056
18
4.934866e-72
2.344061e-71
Chromosome 1
22.27584
18
0.2199687
2.199687e-01
Chromosome 2
29.95704
18
0.03786626
3.996994e-02
Chromosome 3
99.89496
18
2.315331e-13
3.142235e-13
Chromosome 4
38.77416
18
0.003055383
3.414840e-03
Chromosome 5
5648.85624
18
9e-41
1.554545e-40
Chromosome 6
2761.68312
18
9e-41
1.554545e-40
Chromosome 7
2094.85368
18
9e-41
1.554545e-40
Chromosome 8
334.30584
18
4.045427e-60
1.281052e-59
Chromosome 9
99.89496
18
2.315331e-13
3.142235e-13
Chromosome 10
391.69056
18
4.934866e-72
2.344061e-71
Chromosome 11
362.43024
18
6.009004e-66
2.283422e-65
Chromosome 12
38.77416
18
0.003055383
3.414840e-03
Chromosome 13
281.46408
18
3.073959e-49
7.300653e-49
Chromosome 14
571.97448
18
7.158956e-110
1.360202e-108
Chromosome 15
59.81520
18
2.191648e-06
2.776087e-06
Chromosome 16
453.61848
18
5.666139e-85
5.382832e-84
Chromosome 17
233.16504
18
2.123178e-39
3.361698e-39
Chromosome 18
281.46408
18
3.073959e-49
7.300653e-49
Chi-squared (χ2) test: Which of the 24 chemistry traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
ATP breakdown rate
13.5922
23
0.9379572
9.999855e-01
Ash content
21.30557
23
0.5624327
6.799057e-01
Average glycogen
57.72262
23
8.096996e-05
2.776113e-04
Average glycolytic potential
21.23747
23
0.5665881
6.799057e-01
Average lactate
22.74362
23
0.475823
6.717501e-01
Carnosine content
9.85137
23
0.9921586
9.999855e-01
Cholesterol level in meat
36.33209
23
0.03814331
7.041842e-02
Empty body lipid content
47.85032
23
0.001748398
4.196155e-03
Empty body protein content
47.47658
23
0.001950861
4.256424e-03
Empty body protein linear
4.65494
23
0.9999855
9.999855e-01
Estrone, laboratory
22.15428
23
0.5109549
6.799057e-01
Fat androstenone level
39.62625
23
0.01691897
3.383794e-02
Fat protein content
98.00525
23
3.104942e-11
1.490372e-10
Fat skatole level
128.49463
23
1.204162e-16
1.444994e-15
Glucose-6-phosphate content
29.20139
23
0.1737254
2.605881e-01
Hematin pigment content
31.59929
23
0.1087681
1.740290e-01
Muscle fat content
35.96134
23
0.04162959
7.136501e-02
Muscle moisture percentage
105.1889
23
1.766654e-12
1.059992e-11
Muscle myoglobin content
12.33926
23
0.9648975
9.999855e-01
Residual glycogen and glucose
55.95862
23
0.0001434381
4.303143e-04
androstenone, laboratory
298.57254
23
8.890367e-50
2.133688e-48
indole, laboratory
93.12252
23
2.114217e-10
8.456868e-10
muscle protein percentage
49.17914
23
0.001179084
3.144224e-03
skatole, laboratory
121.09539
23
2.642088e-15
2.113670e-14
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
14196.582720
Number of traits:
24
df
=
414
Number of QTLs:
803
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
