Authors: Li X, Kim SW, Do KT, Ha YK, Lee YM, Yoon SH, Kim HB, Kim JJ, Choi BH, Kim KS
(Contact: kwanskim@chungbuk.ac.kr ) Affiliation: Department of Animal Science, Chungbuk National University, Cheongju, Chungbuk, 361-763, South Korea Title: Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies. Journal: Molecular Biology Reports, 38(6): 3805-20 (2011)
DOI :
10.1007/s11033-010-0496-1 Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Ash content
Chr.1 : Asso:19371 .
QTL for Longissimus muscle area
Chr.1 : Asso:19372 . Chr.12 : Asso:19413 . Chr.18 : Asso:19443 .
QTL for Body weight
Chr.2 : Asso:19373 . Chr.5 : Asso:19379 . Chr.6 : Asso:19381 . Chr.7 : Asso:19390 . Chr.8 : Asso:19393 . Chr.9 : Asso:19396 . Chr.12 : Asso:19401 , Asso:19420 , Asso:19422 , Asso:19424 .
QTL for Average daily gain
Chr.3 : Asso:19374 . Chr.5 : Asso:19375 . Chr.6 : Asso:19382 . Chr.7 : Asso:19389 , Asso:19392 . Chr.8 : Asso:19394 . Chr.9 : Asso:19395 . Chr.10 : Asso:19400 . Chr.12 : Asso:19421 , Asso:19423 . Chr.15 : Asso:19432 . Chr.17 : Asso:19441 .
QTL for Subcutaneous fat thickness
Chr.5 : Asso:19376 . Chr.6 : Asso:19383 . Chr.17 : Asso:19440 , Asso:19442 .
QTL for Muscle protein percentage
Chr.5 : Asso:19377 . Chr.15 : Asso:19434 .
QTL for Fat weight (total)
Chr.5 : Asso:19378 . Chr.6 : Asso:19386 . Chr.7 : Asso:19391 . Chr.9 : Asso:19397 . Chr.17 : Asso:19439 .
QTL for Muscle fat content
Chr.6 : Asso:19380 . Chr.10 : Asso:19398 . Chr.12 : Asso:19419 . Chr.13 : Asso:19427 . Chr.15 : Asso:19433 .
QTL for Carcass weight (hot)
Chr.6 : Asso:19384 , Asso:19387 .
QTL for Muscle moisture percentage
Chr.6 : Asso:19385 . Chr.10 : Asso:19399 . Chr.13 : Asso:19428 .
QTL for Muscle pH
Chr.6 : Asso:19388 . Chr.16 : Asso:19438 .
QTL for Loin weight
Chr.12 : Asso:19402 , Asso:19414 , Asso:19418 .
QTL for Meat color
Chr.12 : Asso:19403 , Asso:19404 , Asso:19405 , Asso:19406 , Asso:19407 , Asso:19409 , Asso:19410 , Asso:19415 . Chr.14 : Asso:19430 . Chr.15 : Asso:19435 , Asso:19437 .
QTL for Shear force
Chr.12 : Asso:19408 , Asso:19411 , Asso:19417 .
QTL for Cooking loss
Chr.12 : Asso:19412 . Chr.14 : Asso:19429 . Chr.15 : Asso:19436 .
QTL for Drip loss
Chr.12 : Asso:19416 , Asso:19425 .
QTL for Skin weight
Chr.13 : Asso:19426 .
QTL for Spareribs weight
Chr.15 : Asso:19431 .
QTL for Front leg weight
Chr.6 : Asso:19444 . Chr.13 : Asso:19454 . Chr.15 : Asso:19455 .
QTL for Diaphragm weight
Chr.6 : Asso:19445 . Chr.16 : Asso:19456 .
QTL for Belly weight
Chr.6 : Asso:19446 , Asso:19450 , Asso:19452 . Chr.17 : Asso:19457 .
QTL for Sirloin weight
Chr.6 : Asso:19447 , Asso:19448 .
QTL for Hind leg weight
Chr.6 : Asso:19449 , Asso:19451 . Chr.12 : Asso:19453 .
QTL/association Reported by chromosomes:
Chr.1 (2) ,
Chr.2 (1) ,
Chr.3 (1) ,
Chr.5 (5) ,
Chr.6 (18) ,
Chr.7 (4) ,
Chr.8 (2) ,
Chr.9 (3) ,
Chr.10 (3) ,
Chr.12 (26) ,
Chr.13 (4) ,
Chr.14 (2) ,
Chr.15 (8) ,
Chr.16 (2) ,
Chr.17 (5) ,
Chr.18 (1) .
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Li X, Kim SW, Do KT, Ha YK, Lee YM, Yoon SH, Kim HB, Kim JJ, Choi BH, Kim KS (2011). Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies.. Molecular biology reports, 38(6): 3805-20;
Curated into QTLdb on 2013-01-25. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=GxGz0H0GxJ
OR
Li X, Kim SW, Do KT, Ha YK, Lee YM, Yoon SH, Kim HB, Kim JJ, Choi BH, Kim KS (2011). Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies.. Molecular biology reports, 38(6): 3805-20; DOI: https://dx.doi.org/10.1007/s11033-010-0496-1
