| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 119.30 (cM) |
| QTL Span: | 119.30-119.30 (cM)
102.0-102.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80890777 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0247 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were German Landrace pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for coping behavior during backtest. A total of 48,909 SNPs were used for analysis. |
| Analysis: | Generalized linear mixed models were used. |
| Software: | JMP, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ponsuksili S, Zebunke M, Murani E, Trakooljul N, Krieter J, Puppe B, Schwerin M, Wimmers K |
| Affiliation: | Leibniz Institute for Farm Animal Biology (FBN), Institute for Genome Biology, Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany |
| Title: | Integrated Genome-wide association and hypothalamus eQTL studies indicate a link between the circadian rhythm-related gene PER1 and coping behavior |
| Journal: | Scientific reports, 2015, 5: 16264 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Backtest; duration of struggling bouts; day 5 |
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