| QTL Map Information |
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| Chromosome: | 7 |
| QTL Peak Location: | 36.40 (cM) |
| QTL Span: | 36.40-36.40 (cM)
30.1-30.1 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs319688910 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 7.77% | | P_values | 3.08E-10 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from six pig populations: White Duroc x Erhualian F2, Sutai, Duroc-Landrace-Yorkshire, Laiwu, Erhualian, and Bamaxiang. |
| Breeds associated:
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| Design: | Animals were genotyped using either the PorcineSNP60 v2 BeadChip or the Affymetrix Axiom SNP chip, with data imputed to sequence level, and analyzed for muscle fatty acid composition traits. |
| Analysis: | Single-population GWAS was performed using mixed models. Meta-analysis was performed using a Z-score method. |
| Software: | SAMtools, Beagle, GATK, PLINK, METAL, GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang J, Zhang Y, Gong H, Cui L, Ma J, Chen C, Ai H, Xiao S, Huang L, Yang B |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, China |
| Title: | Landscape of Loci and Candidate Genes for Muscle Fatty Acid Composition in Pigs Revealed by Multiple Population Association Analysis |
| Journal: | Frontiers in Genetics, 2020, 10:1067 |
| Links: |
PubMed | Abstract | List all data
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