| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
2.4-2.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs341716219 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 0.048 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Pietrain boars. |
| Breeds associated:
|
| Design: | Pigs were genotyped using the Affymetrix 660K Axiom Porcine Genotyping Array and analyzed for sperm quality traits. A total of 466,592 SNPs were used for analysis. |
| Analysis: | Linear regression models were used for GWAS. |
| Software: | PLINK, GCTA v1.91.5 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Gòdia M, Reverter A, González-Prendes R, Ramayo-Caldas Y, Castelló A, Rodríguez-Gil JE, Sánchez A, Clop A |
| Affiliation: | Consejo Superior de Investigaciones Científicas (CSIC), 08003, Barcelona, Catalonia, Spain |
| Title: | A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine |
| Journal: | Genetics, Selection, Evolution : GSE, 2020, 52(1): 72 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | percent motile spermatazoa after 5 min at 37 deg C |
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