| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
97.2-97.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs331825199 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 9.30% | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #269472
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Suhuai pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Neogen GGP Porcine 80K SNP chip, with data imputed to whole-genome sequence, and GWAS were performed for carcass length and rib number. |
| Analysis: | A mixed linear model was used. GWAS were performed based on both chip and whole-genome sequence data. |
| Software: | PLINK v1.9, LDAK v5.2, SAMTOOLS, Beagle v5.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Liu K, Hou L, Yin Y, Wang B, Liu C, Zhou W, Niu P, Li Q, Huang R, Li P |
| Affiliation: | Key Laboratory in Nanjing for Evaluation and Utilization of Pigs Resources, Ministry of Agriculture and Rural Areas of China, Institute of Swine Science, Nanjing Agricultural University, Nanjing, China |
| Title: | Genome-wide association study reveals new QTL and functional candidate genes for the number of ribs and carcass length in pigs |
| Journal: | Animal Genetics, 2023, 54(4):435-445 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Imputation data |
User inputs on reference #36911996
Add your comments
Note similar findings
Note contradictions
|
