| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
125.2-125.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs343875442 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were (Pietrain x Duroc) x (Landrace x Yorkshire) pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using low-coverage whole-genome sequencing, and GWAS were performed for meat color traits. A total of 458,175 SNPs were used for analysis. |
| Analysis: | GWAS was performed using the leave-one-chromosome-out method and a linear mixed model. |
| Software: | PLINK, LDAK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zha C, Liu K, Wu J, Li P, Hou L, Liu H, Huang R, Wu W |
| Affiliation: | Department of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China |
| Title: | Combining genome-wide association study based on low-coverage whole genome sequencing and transcriptome analysis to reveal the key candidate genes affecting meat color in pigs |
| Journal: | Animal Genetics, 2023, 54(3): 295-306 |
| Links: |
PubMed | Abstract | List all data
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