| QTL Map Information |
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| Chromosome: | 18 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
0.3-0.3 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs338729856 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were French Large White pigs from lines divergently selected on RFI. |
| Breeds associated:
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| Design: | Animals were genotyped using either the Porcine SNP60v2 BeadChip, Porcine HD Array GGP chip, or Affymetrix Axiom Porcine HD Genotyping Array chip. Data were imputed to HD, and GWAS were performed for feed intake, carcass, and meat quality traits. A total of 570,447 SNPs were used for analysis. |
| Analysis: | Linear models were used. GWAS were performed using the full dataset and for each of the two lines separately. |
| Software: | Genome Studio v2.0.4, PLINK v1.90, FImpute, R software v3.6.2, GEMMA v0.97 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Delpuech E, Aliakbari A, Labrune Y, Fève K, Billon Y, Gilbert H, Riquet J. |
| Affiliation: | GenPhySE, Université de Toulouse, INRAE, ENVT, 31320, Castanet-Tolosan, France |
| Title: | Identification of genomic regions affecting production traits in pigs divergently selected for feed efficiency |
| Journal: | Genetics, Selection, Evolution : GSE, 2021, 53(1): 49 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | High RFI line |
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