SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP, Martien Groenen, Max Rothschild, Miguel Perez, Kwan-suk Kim, Gary Rohrer groups
Scores: [ Quality Score / Info. Score ]
(a) Sequence quality score: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
(b) Information score: Range: 10-70. The presence of (1) minor allele frquency (MAF), (2) chromosome location, (3) annotation, each add 20 to the total "info score".
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu (about the compilation of this data set).
Date: July 31, 2008

Records 9001 - 9100:

Custom Name	dbSNP id	Molecule	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	MAF	MAF Species	Chromosome	Annotation	Reference	Source	Scores (seq.qual/info)
SH454		Genomic	ATCTCGCCAAGCCCAATTGGCTGTTCCCCT CGATGGGAGGGACTGTTCTTGAGTCACCTG	A/G	GGTGACACTAAGTCTCCCAGCAGCTCCATG TTGAAAGTTGGGGAGAGGAAAGGTCTTCTC				\|gnl\|ti\|1657973955\|"TIMP1, INTRON 5"	By sequencing	Max Rothschild (Du2)	120 / 30
SH455		Genomic	GGTGTTTCCCTGCACATCCATCCCCTGCAA ACTGCAGAGTGACACTCACTGCTTGTGGAC	A/G	GACCAGCTCCTCACAGGCTCTGACAAGGGC TTCCAGAGCCGCCACCTTGCCTGCATGCCC				\|gnl\|ti\|1657973955\|"TIMP1, EXON 6"	By sequencing	Max Rothschild (Du2)	120 / 30
SH465		Genomic	GGGAGGGAATTGAGTGGAAAAGGATCTCAG TGAGAAAGGCCCGGGAGGGCTCTGGGGGAC	G/T	CTGGACTGGGAGAGAGGATGCGAGCCCCCC CACCCCCAACCAAGTCTGGTCCACGAGGGA				\|AC091402.2\|"ELN, INTRON 20"	By sequencing	Max Rothschild (Du2)	120 / 30
LS01	ss86352080	Genomic	ATTGGCTGGGGGACGGGCAGCCGGCTCCCC CTCTCCCAGGGGCAGGGTTCCTCCCCGCTC	A/G	CCCTCGGGATGGTATAAAAGGGGCCCGGGC CAGTGGTCGGAGCAGACGGGAGTTTCTCCT		Large White, Landrace		\|\|COL1A1	By sequencing	Max Rothschild (Fan)	120 / 30
LS08	ss86352087	Genomic	ACTCCTATGAATTTGTATTTTTCTCCCTTC CTTTTCTTCATAGGGCAACCCTGGAGCCAA	C/T	GGCCTTCCTGGTGCTAAGGGTGCTGCTGTG AGTATTTGGCTAAAATGTGCTGCTGTGGTT	0.2339	Large White, Landrace	9	\|\|COL1A2	By sequencing	Max Rothschild (Fan)	120 / 70
LS09	ss86352088	Genomic	CTTGTGGCTAGGAGTGGGTGGAACACATTT ATACAGGGGAACAAATTACGGTCTTCTTTG	C/T	TTCCCCTCAACATGTGGGTGAACAAGTTTG CCTTTCCCCGCTTGAGACCATACAATTCCC	0.4316	Large White, Landrace	13	COL8A1\|Collagen, type VIII, alpha 1\|COL8A1	By sequencing	Max Rothschild (Fan)	120 / 70
LS10	ss86352089	Genomic	ATGAAGGTCTTTATGAACAGTCATGAAAGG AAAAACAGTACATGGTTTTTCACACTGTAG	A/C	CTTTCTGTAAGTCTAGAATCTAAAATAGCA TAATTAGGAAATATGGTAATACACCTGGGT	0.3957	Large White, Landrace	1	COL9A1\|Collagen, type IX, alpha 1\|COL9A1	By sequencing	Max Rothschild (Fan)	120 / 70
LS11	ss86352090	Genomic	TTTTGTTTATTATCTTTTAGAGCATTTTGC TGCGAGGCTGCTAGCCTCAAGCGTCCGGAA	T/G	CAGGAGCCTCTGGCCTCCCTGGGCGTCCTG GTCCCCCTGGCCCCCCAGGTCCCCCTGGAG	0.4189	Large White, Landrace	1	\|\|COL9A1	By sequencing	Max Rothschild (Fan)	120 / 70
LS30	ss86352108	Genomic	GCCGCTGAGGACCAGAGTGGAGGTGGAGGT CAATCCAAAAGAGGTCTGGGGTGTGTTCTG	C/T	GATGCTGGCCGGACTGCAAGGCATCCGCTG ACCCTCCTCTTTTTTCCCTTAGAAACACAC		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	120 / 30
LS31	ss86352109	Genomic	GCATCTCCTGCTCCCCACCCTGGATCAATA AGGACTGAGGCAAGCGGGTGTCCCTCGGTG	A/G	TGCTGACCCAGAGAATTTGTTCCTAACAAT CATATCTTTGCAGGTCAACTTCTTCTTTTT	0.242	Large White, Landrace	9	CALCR\|Calcitonin receptor\|CALCR	By sequencing	Max Rothschild (Fan)	120 / 70
LS32	ss86352110	Genomic	CGTGCTCGTGAAGAAACTGAAGGAAAGCCA GGAGGCGGAATCCCACATGTACCTGAAGGC	A/G	GTGCGGGCCACTCTGATCTTGGTGCCCCTG CTGGGCGTCCAGTTTGTCGTCCTTCCCTGG		Large White, Landrace		\|\|CALCR	By sequencing	Max Rothschild (Fan)	120 / 30
LS33	ss86352111	Genomic	CATCTCACTTTCACCACCTCGCCCACTGGA GACCCTCTCCACAGGCTCCCAGGTGGTGCT	A/G	TCCCCCAAGCAGCGGCTGAAGGAGCCGGGG TGGCACGGTCTCTAGGGGTGGGTTCTTTTG		Large White, Landrace		\|\|CALCR	By sequencing	Max Rothschild (Fan)	120 / 30
LS34	ss86352112	Genomic	TATGTAGTAGTAATCCTATTTTTGTTTACA AATGTGGAAAACAGAGTATTTCTGGCAGCT	C/G	TAGTACAAATGTGATAATATATTGCTGAAA TATTCTTGATGCTCTTGTGCTAATATAGTA	0.2425	Large White, Landrace	9	\|\|CALCR	By sequencing	Max Rothschild (Fan)	120 / 70
LS35	ss86352113	Genomic	TCTTTACAAGGACAGATATTTGTCCTGAGA CTGACCCACTGCACAGAGCTGAGGTCAGAG	C/T	TCCACCCACAGTCCTTTCAGCCTTTGCTTC CCTCCCCCAGAATCTGGGGGCCACGTTCGG	0.2423	Large White, Landrace	9	\|\|CALCAR	By sequencing	Max Rothschild (Fan)	120 / 70
LS36	ss86352114	Genomic	GGGGATGTCGAAGACCAACATAACCAATAC CAGTGGCTTCCCAGCCTGGATTATTACCAA	A/C	ACAGTTGCTAATGCCATGAAAACAGGTTTC TATCATTATGAAATGCCAACACATCCAGTC	0.39	Large White, Landrace	9	\|\|CALCAR	By sequencing	Max Rothschild (Fan)	120 / 70
LS45	ss86352123	Genomic	TAGAGCAACTGCCTGGAATAAACAAGTAAA GAAAGGTAAATCTATTACCTTCATTTAATT	C/T	TTTTCCATCAACATTAATTAGCGGCACTAT AGGCTGACATGGCACATGGTAGACACAGAA		Large White, Landrace		\|\|hDBP	By sequencing	Max Rothschild (Fan)	120 / 30
LS46	ss86352124	Genomic	ACAGAATGAATAAAGGGACAAAAGCAAAGG TAATCCACATGAAAGTTTAGGAAAAAACTT	C/T	TAATGAAAGTATTGATTAAAACTGACTACT ATAACCCTTTCTCTAAATCCCTAGTGCTGT	0.3371	Large White, Landrace	8	VDBP\|Vitamin D binding protein\|hDBP	By sequencing	Max Rothschild (Fan)	120 / 70
LS47	ss86352125	Genomic	AAGTACTTATGAAAAATTAGATTGTTTCCC ATGAATGTTTTGACCAATCCTGCCATTTTC	A/G	CCCCACAGATTTATGTATGAATATTCCATT AATTATGGACAAGCTCCTCTGACACTTTTA	0.4472	Large White, Landrace	8	VDBP\|Vitamin D binding protein\|hDBP	By sequencing	Max Rothschild (Fan)	120 / 70
LS50	ss86352128	Genomic	TATGGATGCATTACATTCACTTTTAGCTGC TCCCCAGTCCAAAGTTCTTCTTCTTATAAC	C/T	GGTGTCTGTACACATGTAGACCAAGCAGGC ATCAAAAGTAGGGGAGAAATGTGAAGAACA	0.1826	Large White, Landrace	9	IL6\|Interleukin 6\|IL6	By sequencing	Max Rothschild (Fan)	120 / 70
LS51	ss86352129	Genomic	TTATCGTCTGCCCAAGAGTCCTGAATTCTT AACTGCTTTATCAAAAGGGTGAGTGTATAA	A/G	TAAGATTGTTTTTTTTCATTTCAGGAAATG CAGCATATTGTTAAATCACAACACATCAGA	0.3427	Large White, Landrace	11	RANKL\|Tumor necrosis factor (ligand) superfamily, member 11\|RANKL	By sequencing	Max Rothschild (Fan)	120 / 70
LS52	ss86352130	Genomic	GTATGGCTATTCAAAAACCCCTATGGCCAC TGTTCTTTGGGCTAATATGGCTTCCCTCCT	C/T	TCCTCTCCAGCCATGGTGGAAGGTTCATGG TTAGATCTGAGCAGAAGGAATAAGCCTGAG		Large White, Landrace		\|\|RANKL	By sequencing	Max Rothschild (Fan)	120 / 30
LS53	ss86352131	Genomic	ATGTATATAGGTGTGTGAGACTACTAAGCG GTATGGCCCCCAGGGTACCAGAAGACCCTC	C/T	CCATGCCTTTGAACTCTGTAGAGAGCAGAT GTATTTACAGCCAATGGAAGGGTTTTCTTA	0.4101	Large White, Landrace	11	\|\|RANKL	By sequencing	Max Rothschild (Fan)	120 / 70
LS54	ss86352132	Genomic	TGTTTGGCCTATGGGAGGGGTTAATTCTCT GGCTCTAGCCTGTGGCGATGTGCCACCCCC	A/C	TGTGGCTGAGAAGTGGAGAAGGTGTCATCT AATTGCAGACTGATGACCATCTGAAGGGTT		Large White, Landrace		\|\|RANKL	By sequencing	Max Rothschild (Fan)	120 / 30
LS55	ss86352133	Genomic	TACCCCTAATTGGCTCAGTGTCTTGGTAGA CAATTTGCCTGGCACCAAACTAAATGCAGA	A/G	AGTGTGGAGAGGATAAAACGACGACACAGC TCACAAGAACAGACTTTTCAGCTGCTGAAG	0.416	Large White, Landrace	4	OPG\|Osteoprotegerin\|OPG	By sequencing	Max Rothschild (Fan)	120 / 70
LS75	ss86352153	Genomic	TACATTGCACATGGACCTAGTTACGGGTTA TATAGTCTTGATGTCTTAAACAATGCTTAT	T/G	GGGAATCTGACAGCTAAACCATAGATAGAT TTTATCTTAAAACCATTAGTTGAGATTCTA		Large White, Landrace		\|\|LRP5	By sequencing	Max Rothschild (Fan)	120 / 30
SH461		Genomic	TGGTCTGGATCCTCCACTGTAAGAAGAGCC GTGGTTGATACTGTTYCTCCCCCATCCCCC	C/T	GCCCCCACCCCGTCTCCCTTTACGCTCATT TTCACAAGGAATGGAGTCATTGTACCATTT				\|NM_001001264\|"WT1, 3'UTR"	By sequencing	Max Rothschild (Du2)	119 / 30
SH471		Genomic	TGCCGCTTCCTCGTTTTAGCCACAGCGAAC GTAAAAATAAATGGGGAGCCCAGAAAAGAG	C/T	TCTAAGAAAATATGGATAACTTCAAAAAAA TTAGAAACTTCATCTCTGACGAGGAAGGCT				\|1420733297\|"ELP4, Intron 11"	By sequencing	Max Rothschild (Du2)	119 / 30
SH472		Genomic	ATGGATAACTTCAAAAAAATTAGAAACTTC ATCTCTGACGAGGAAGGCTGCTTATCAATA	A/G	TAGCTATAGATTTTCAGTTTCAAGAATGGT CGTTACTAACGAAAATAATAATGCAATCTT				\|1420733297\|"ELP4, Intron 11"	By sequencing	Max Rothschild (Du2)	119 / 30
SH473		Genomic	CAAATGGAGTATGATGAGGGTGCTAAGATG ATGGCTATATGGGACTCATGCTTATTTCAA	A/T	ATGAGAAAAATGATATTATGGGATTAAAAA YGTGACACTTGTATTTAAAATACTCTTCAG				\|1383202339\|"TRAF6, Intron 4"	By sequencing	Max Rothschild (Du2)	119 / 30
SH476		Genomic	TCTTTTTTATTATCATGGGGCAAAGCCAGA GTAAATGGAGTAAGAAATTCCTGGTTCCTA	C/T	TTATATTGTTGTTAATTATATAAACAATAA AAGGGTTGGTATGAATTCAGCAAGAATTTA				\|1383202339\|"TRAF6, Intron 4"	By sequencing	Max Rothschild (Du2)	119 / 30
LS06	ss86352085	Genomic	TAATAGCCTTCTGCATACTTAATTGAAATC CATTACCTTTTAGTTGGAATTAGAACAAGA	A/T	CTATTTATTTTYAGTGGATTCTTGCACATG TTGGAAATTGGACAAAGCAAATGATGCCTG		Large White, Landrace		\|\|COL1A2	By sequencing	Max Rothschild (Fan)	119 / 30
LS07	ss86352086	Genomic	GCATACTTAATTGAAATCCATTACCTTTTA GTTGGAATTAGAACAAGAWCTATTTATTTT	C/T	AGTGGATTCTTGCACATGTTGGAAATTGGA CAAAGCAAATGATGCCTGTAACTTTTTCTT	0.2205	Large White, Landrace	9	COL1A2\|Collagen, type I, alpha 2\|COL1A2	By sequencing	Max Rothschild (Fan)	119 / 70
LS24	ss86352102	Genomic	CACGTATACTGTTCTGAAGGATGGCTGCAC GGTGAGTCAGGCCGGCTGGGTCACCAGAGC	A/G	ATGAGCTTCTCGGGGCCTGGGGCTCAGGCT GGAGCAGGTAGAGGGTTGGTCCACAGCAGG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	119 / 30
LS42	ss86352120	Genomic	GAACACAACAGGAGACTAGTCTGATGGAAC CACAGATCAAACTTTTACTGCTTTACAGGA	C/T	TAAGCTAGGGTTGCCTAGAACAATGACTAA AGTCAACATYATGTGTTCATTGGTCAAAAG		Large White, Landrace		\|\|hDBP	By sequencing	Max Rothschild (Fan)	119 / 30
LS44	ss86352122	Genomic	ACTGCAATATTCCATTTTTTAAAATACACA CACTTCATATTAAAAAGTATGCCAATGTGA	A/C	AATCTAAAATTCTGCATTTCTTGACGTGTC TTTCCCCTCAGGTCGATGGTCCTATACAGC		Large White, Landrace		\|\|hDBP	By sequencing	Max Rothschild (Fan)	119 / 30
LS48	ss86352126	Genomic	CCACTTTTCTTGAGAACTTCCTGGCCATGG TAGATCATGAATCAGCCCTCTAGTGGTGTT	C/T	GTTTTGGGAGCACTTATATGATAACAGCTC TRATACTCTTTCCCAGATGTGTGAGAAGTA		Large White, Landrace		\|\|IL6	By sequencing	Max Rothschild (Fan)	119 / 30
LS49	ss86352127	Genomic	GATCATGAATCAGCCCTCTAGTGGTGTTYG TTTTGGGAGCACTTATATGATAACAGCTCT	A/G	ATACTCTTTCCCAGATGTGTGAGAAGTATG AGAAGTGTGAAAACAGCAAGGAGGTACTGG		Large White, Landrace		\|\|IL6	By sequencing	Max Rothschild (Fan)	119 / 30
LS59	ss86352137	Genomic	CTGCGCAGCCTGTGGAGGAGAAAAACGGTG ACCAGGACACCCGCAAGGGCCTGATGYACG	C/T	CCTGAAGCATCTCAAGACGTACCACTTCCC CAAAACCGTCACACAGAGTCTGAAGAAAAT		Large White, Landrace		\|\|OPG	By sequencing	Max Rothschild (Fan)	119 / 30
LS69	ss86352147	Genomic	TTAAAGTAAAAGACCTGATGGATGGAGAGA GGAACCACTTGACAAATGAGAGCAGGGGAG	A/G	TCAGGTTCAGAGCTGACCCCAGCCCCCTTA TCTACCCCTGCTCTCCCCCCACTCGGGCTG		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	119 / 30
LS73	ss86352151	Genomic	ACCCCCTCACGTCCTTCTGGTTTAGAAAGA GAATGAGGGGCTGGGGACTGGGCTCCAAGC	C/T	TAAAACTTTAAACAACAACAGCAACACTTA GAAATCAGGGATTCAGGGATGTGTGGCCTG		Large White, Landrace		\|\|TNF1	By sequencing	Max Rothschild (Fan)	119 / 30
LS74	ss86352152	Genomic	TTAAACAACAACAGCAACACTTAGAAATCA GGGATTCAGGGATGTGTGGCCTGGACAACC	A/G	GGCACTGACCACCACCAAGAATTGGAACTG GGGCTTCCAGACTCGCTGGGGTCCTTGGGT	0.4725	Large White, Landrace	7	\|\|TNF1	By sequencing	Max Rothschild (Fan)	119 / 70
LS78	ss86352156	Genomic	GGAGGTGTGGACACGCGCTGAGCCAGCCTC GGCCCCTCTGGGGGAGGTCCCCTTCCTCCC	C/T	GGGTGCTGCTGCTGGAGGCCTGTCGGGAGA GCCCCAGTGACAGCTGTTTTCTACACCTGC		Large White, Landrace		\|\|LRP5	By sequencing	Max Rothschild (Fan)	119 / 30
LS79	ss86352157	Genomic	GGAGGCCTGTCGGGAGAGCCCCAGTGACAG CTGTTTTCTACACCTGCCGAGAGCCGGGTC	C/T	CAGACACCCCTGTGCCAGGATTCTGATCTG ACCCTACACCACTAAGCTTAGGTCTTCACG	0.1483	Large White, Landrace	2	LRP5\|Low density lipoprotein receptor-related protein 5\|LRP5	By sequencing	Max Rothschild (Fan)	119 / 70
SH444		Genomic	CAAAGATGAGAATTACGCGGGACATGCTGG CTGAGCCTCTGCGGACAGCATCGCTGAGGC	A/T	GGTTGAAAAGTAACCTCGGGGAGTTCCCAC TGTGGCTCAGTGGTAMTGAACCTGACTCGT				\|BX918654\|"TGFBI, Intron 14"	By sequencing	Max Rothschild (Du2)	118 / 30
SH462		Genomic	TCAAGGGGCTGTAGGCAGAAAGGCCGGGAA GGTGCCATTCTTGCTGGTGCTGTCCTGTAG	A/G	GCACCAGGGGGAWGGGTTGGGGACCCTGAG GCACTACAGGGCTCCATTYTTTGGGGTCTC				\|gnl\|nisc\|RP44-363K13\|"ELN, 5'UTR"	By sequencing	Max Rothschild (Du2)	118 / 30
SH463		Genomic	GGCAGAAAGGCCGGGAAGGTGCCATTCTTG CTGGTGCTGTCCTGTAGRGCACCAGGGGGA	A/T	GGGTTGGGGACCCTGAGGCACTACAGGGCT CCATTYTTTGGGGTCTCAGGTCACAGCCTC				\|gnl\|nisc\|RP44-363K13\|"ELN, 5'UTR"	By sequencing	Max Rothschild (Du2)	118 / 30
SH475		Genomic	TTAAAATACTCTTCAGCTTTACTGCAGATA ATGGTCACCCCCAAAACTTGAAGAATACTA	A/C	TTTCTTTTTTATTATCATGGGGCAAAGCCA GAGTAAATGGAGTAAGAAATTCCTGGTTCC				\|1383202339\|"TRAF6, Intron 4"	By sequencing	Max Rothschild (Du2)	118 / 30
LS03	ss86352082	Genomic	CACTGCATCTTCTTTCCTCATCCCTCCAAG CCCTGCTGTGTGATGGGGGGAGGCCGCGTC	A/G	CCTCCGTTTCCCTCTCTGGGCAGTCCTTCC CYTCCCTGGGCAGGGACCRGGGTCTGAAGA		Large White, Landrace		\|\|COL1A1	By sequencing	Max Rothschild (Fan)	118 / 30
LS04	ss86352083	Genomic	GAGGCCGCGTCRCCTCCGTTTCCCTCTCTG GGCAGTCCTTCCCYTCCCTGGGCAGGGACC	A/G	GGGTCTGAAGAATAATGGGCCCTTCCAAGT AACTTCTGCGAGGATGAGGGGGTGCACAGA		Large White, Landrace		\|\|COL1A1	By sequencing	Max Rothschild (Fan)	118 / 30
LS05	ss86352084	Genomic	CTGCTGTGTGATGGGGGGAGGCCGCGTCRC CTCCGTTTCCCTCTCTGGGCAGTCCTTCCC	C/T	TCCCTGGGCAGGGACCRGGGTCTGAAGAAT AATGGGCCCTTCCAAGTAACTTCTGCGAGG		Large White, Landrace		\|\|COL1A1	By sequencing	Max Rothschild (Fan)	118 / 30
LS21	ss86352100	Genomic	GGGTGGCCTCCATGGGCCTGCTCTCTCCCT GCGCRGTTCTGCAGGCCTGTCCCCGCAGCA	C/T	GGGGCCTGGGTCCTGCTCTGCCCCTACCTC CCTGCTTCTCCCTCTCCTTGGGCCTCGGCC	0.3133	Large White, Landrace	5	COL2A1\|Collagen, type II, alpha 1\|COL2A1	By sequencing	Max Rothschild (Fan)	118 / 70
LS22	ss86352101	Genomic	GTCCTGCTCTGCCCCTACCTCCCTGCTTCT CCCTCTCCTTGGGCCTCGGCCCCATCGCTC	A/G	CCTGACTGCTCCTTGGTGTCTCTGGCGCAG GGTGAACGAGGTTTCCCAGGGGAGCGTGGC		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	118 / 30
LS43	ss86352121	Genomic	ACTTTTACTGCTTTACAGGAYTAAGCTAGG GTTGCCTAGAACAATGACTAAAGTCAACAT	C/T	ATGTGTTCATTGGTCAAAAGTATGACTGCA ATATTCCATTTTTTAAAATACACACACTTC		Large White, Landrace		\|\|hDBP	By sequencing	Max Rothschild (Fan)	118 / 30
LS56	ss86352134	Genomic	AAAGACCAAGACATGGTCAAGAAGATTATC CAAGGTGTGGTAACATGAAATAAACAAGTC	A/G	ATYAGAAATCAAAACACCTGTTTATCATAA AACAGAAACAAGGCTATGTACCTGTTTGTT		Large White, Landrace		\|\|OPG	By sequencing	Max Rothschild (Fan)	118 / 30
LS57	ss86352135	Genomic	GACCAAGACATGGTCAAGAAGATTATCCAA GGTGTGGTAACATGAAATAAACAAGTCRAT	C/T	AGAAATCAAAACACCTGTTTATCATAAAAC AGAAACAAGGCTATGTACCTGTTTGTTGTA		Large White, Landrace		\|\|OPG	By sequencing	Max Rothschild (Fan)	118 / 30
LS58	ss86352136	Genomic	AAACAGAAACAAGGCTATGTACCTGTTTGT TGTATGGATGATGTTTCCCTTTGGGAATTA	C/T	TGTTGGACTGAAAAAGTTTTTATCAAGTAA TGGTGGAGATGCTGTTCCTAAAGCAGTCGG	0.3679	Large White, Landrace	4	\|\|OPG	By sequencing	Max Rothschild (Fan)	118 / 70
LS70	ss86352148	Genomic	GGCCCTTGGGAAATGCTCTCTAAATATTTG TTGCACGAATGAGTGAGTAAGCAGGGACAC	C/T	GATAKAAAGAGAGATGAGTAGACAGACAAG GGGTGTGGTAGAAAGATAGGGAAAAAACAA		Large White, Landrace		\|\|TNF1	By sequencing	Max Rothschild (Fan)	118 / 30
LS71	ss86352149	Genomic	TTGGGAAATGCTCTCTAAATATTTGTTGCA CGAATGAGTGAGTAAGCAGGGACACYGATA	T/G	AAAGAGAGATGAGTAGACAGACAAGGGGTG TGGTAGAAAGATAGGGAAAAAACAAGTGAT	0.1824	Large White, Landrace	7	TNFa\|Tumor necrosis factor a\|TNF1	By sequencing	Max Rothschild (Fan)	118 / 70
LS72	ss86352150	Genomic	TGTGGTAGAAAGATAGGGAAAAAACAAGTG ATCTGGATAAAGATAGTGAGACAGGAAGAG	A/G	TAGAGGAGATAGGAAAGAGAGATAAGGAGA GAAGAAGGAAGCGTGGGTGTCTGGCACGTG		Large White, Landrace		\|\|TNF1	By sequencing	Max Rothschild (Fan)	118 / 30
LS76	ss86352154	Genomic	GGACGCCATGGGCGTGGTGCTCCGGGGGGA CCGAGACAAGCCGAGGGCCATCGTCGTCAA	C/T	GCYGAGCGAGGGTACGGGGCCGAAGGGGTG GGTGGGCACCGCAGGGTGGGGTCTGCSCTG		Large White, Landrace		\|\|LRP5	By sequencing	Max Rothschild (Fan)	118 / 30
LS77	ss86352155	Genomic	CGCCATGGGCGTGGTGCTCCGGGGGGACCG AGACAAGCCGAGGGCCATCGTCGTCAAYGC	C/T	GAGCGAGGGTACGGGGCCGAAGGGGTGGGT GGGCACCGCAGGGTGGGGTCTGCSCTGGCT		Large White, Landrace		\|\|LRP5	By sequencing	Max Rothschild (Fan)	118 / 30
SH445		Genomic	AGCATCGCTGAGGCWGGTTGAAAAGTAACC TCGGGGAGTTCCCACTGTGGCTCAGTGGTA	A/C	TGAACCTGACTCGTAGCCATGAGGACGCAG GTTCGATCCCTRGCTTTGTTCAGGGRGTTA				\|BX918654\|"TGFBI, Intron 14"	By sequencing	Max Rothschild (Du2)	117 / 30
SH446		Genomic	CACTGTGGCTCAGTGGTAMTGAACCTGACT CGTAGCCATGAGGACGCAGGTTCGATCCCT	A/G	GCTTTGTTCAGGGRGTTAAGGATCCAGCAT TGCCATGAGCTGTGTGTAGGTAGCAGACGA				\|BX918654\|"TGFBI, Intron 14"	By sequencing	Max Rothschild (Du2)	117 / 30
LS20	ss86352099	Genomic	GGGTGAGTGTCCTGTCACCCTTTTCTGGGT GGCCTCCATGGGCCTGCTCTCTCCCTGCGC	A/G	GTTCTGCAGGCCTGTCCCCGCAGCAYGGGG CCTGGGTCCTGCTCTGCCCCTACCTCCCTG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	117 / 30
LS25	ss86352103	Genomic	AGGTGGCATAGTCCTAAAGGGGCGTGAGGG TGAGGGGCCACGTGGGGACGACACGCAGGG	T/G	GATGGGTGAGGGAGAGGTGCCTGCTGCCCT GTCTCCTCCACTCCCTGGGCTCCGCGTGTC	0.1027	Large White, Landrace	5	\|\|COL2A1	By sequencing	Max Rothschild (Fan)	117 / 70
LS29	ss86352107	Genomic	TGTCCAGTGCCTRTTATAGGAACGTTCGTG YGGTGCGTGKGGGCCCTGTCCTCACAGGCC	A/G	GGTGCTCACTGTGGGGAGTGGGAGCGGAGG AGAGCAGGGGGAGGAGGCCCCGCCGCTGAG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	117 / 30
LS37	ss86352115	Genomic	GGCCAAAGGTGCGTCTGGGCTCTGCCTCCG CCTGCCCCAGCTCCACCCCTCCTGGGGTCC	A/G	GGGCCCCACCAGGCACATCCGAGGGAGCAA YGTCAGGCTGGATGTGGGGTGCGGGGGGSG		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS38	ss86352116	Genomic	CTGCCCCAGCTCCACCCCTCCTGGGGTCCR GGGCCCCACCAGGCACATCCGAGGGAGCAA	C/G	GTCAGGCTGGATGTGGGGTGCGGGGGGSGT CCTGTGGGTGCCCACAGCAGCTGGCCATCC		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS39	ss86352117	Genomic	CRGGGCCCCACCAGGCACATCCGAGGGAGC AAYGTCAGGCTGGATGTGGGGTGCGGGGGG	C/G	GTCCTGTGGGTGCCCACAGCAGCTGGCCAT CCTCTCTYGCAGCCGGACACAGCCTGGAGC		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS60	ss86352138	Genomic	TTGTTTGTTTGTTTGGGGGTCCTTTTTTTT TTTTTTTTTTTGTCTTTTAGGGCTGCCCCC	A/G	TGGCATATGCAAGTTCCCAGGCTAGGGGTC GAATYGGAGCTRCAGCTGCCAGCCTACGCC		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	117 / 30
LS12	ss86352091	Genomic	GAACCTGCAACTGTTTTGAGTGGGAAGGTC TATTCTGAGGCTCAGGAGGGGACAGGAGGG	C/G	ACTAGGAGCYCCRGGAGTAACTGGGAAMTG CCGCCCAGCTCAAAGGCGACAGTCTGAGCT		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	116 / 30
LS26	ss86352104	Genomic	AGGGAGAGGTGCCTGCTGCCCTGTCTCCTC CACTCCCTGGGCTCCGCGTGTCCAGTGCCT	A/G	TTATAGGAACGTTCGTGYGGTGCGTGKGGG CCCTGTCCTCACAGGCCRGGTGCTCACTGT		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	116 / 30
LS27	ss86352105	Genomic	CCCTGTCTCCTCCACTCCCTGGGCTCCGCG TGTCCAGTGCCTRTTATAGGAACGTTCGTG	C/T	GGTGCGTGKGGGCCCTGTCCTCACAGGCCR GGTGCTCACTGTGGGGAGTGGGAGCGGAGG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	116 / 30
LS28	ss86352106	Genomic	CTCCACTCCCTGGGCTCCGCGTGTCCAGTG CCTRTTATAGGAACGTTCGTGYGGTGCGTG	T/G	GGGCCCTGTCCTCACAGGCCRGGTGCTCAC TGTGGGGAGTGGGAGCGGAGGAGAGCAGGG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	116 / 30
LS40	ss86352118	Genomic	GCTGGATGTGGGGTGCGGGGGGSGTCCTGT GGGTGCCCACAGCAGCTGGCCATCCTCTCT	C/T	GCAGCCGGACACAGCCTGGAGCTGATCGAG CCCCTCATCAAGTTCCAGGTGGGGCTGAAG		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	116 / 30
LS61	ss86352139	Genomic	TTTTTTGTCTTTTAGGGCTGCCCCCRTGGC ATATGCAAGTTCCCAGGCTAGGGGTCGAAT	C/T	GGAGCTRCAGCTGCCAGCCTACGCCAAAGC CGCAGCAACAGCAACGCGAGATTMGAGCCG		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	116 / 30
SH449		Genomic	CCGTGGACGCTTAGCGCCACCCCCCAGCTC ATCCGAAAGCAGATGTGAYGGCCCCAGAAA	A/G	GGAACAGGCTCYGMGGTGTCATTTGGCAGA GCAGGCACTGCSTGGAGGGKTGTGTTCCTC				\|CJ022379\|"TGFBI, Intron 9"	By sequencing	Max Rothschild (Du2)	115 / 30
SH450		Genomic	AGCGCCACCCCCCAGCTCATCCGAAAGCAG ATGTGAYGGCCCCAGAAARGGAACAGGCTC	C/T	GMGGTGTCATTTGGCAGAGCAGGCACTGCS TGGAGGGKTGTGTTCCTCGCACGTCCAGAG				\|CJ022379\|"TGFBI, Intron 9"	By sequencing	Max Rothschild (Du2)	115 / 30
SH451		Genomic	CGCCACCCCCCAGCTCATCCGAAAGCAGAT GTGAYGGCCCCAGAAARGGAACAGGCTCYG	A/C	GGTGTCATTTGGCAGAGCAGGCACTGCSTG GAGGGKTGTGTTCCTCGCACGTCCAGAGTT				\|CJ022379\|"TGFBI, Intron 9"	By sequencing	Max Rothschild (Du2)	115 / 30
LS62	ss86352140	Genomic	TCTTTTAGGGCTGCCCCCRTGGCATATGCA AGTTCCCAGGCTAGGGGTCGAATYGGAGCT	A/G	CAGCTGCCAGCCTACGCCAAAGCCGCAGCA ACAGCAACGCGAGATTMGAGCCGCATCTTT		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	115 / 30
SH452		Genomic	GCCCCAGAAARGGAACAGGCTCYGMGGTGT CATTTGGCAGAGCAGGCACTGCSTGGAGGG	G/T	TGTGTTCCTCGCACGTCCAGAGTTTGCATG TATCGGGAGAGCAGCGCACCCTCTGTCATT				\|CJ022379\|"TGFBI, Intron 9"	By sequencing	Max Rothschild (Du2)	114 / 30
LS18	ss86352097	Genomic	GTCTGAGCTCAGCCCCCAGCRGGAGGCCAA GGCTGTGGGACAGAAAAGCCTCTGYTCGYC	C/T	GCTCATCCTGCTTTCTTCTTCAGGGCGTTC CTGGTGAAGCTGGAGCTCCTGGYCTCGTGG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	114 / 30
LS19	ss86352098	Genomic	GYTCGYCYGCTCATCCTGCTTTCTTCTTCA GGGCGTTCCTGGTGAAGCTGGAGCTCCTGG	C/T	CTCGTGGGTCCCAGGGTGAGTGTCCTGTCA CCCTTTTCTGGGTGGCCTCCATGGGCCTGC		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	114 / 30
LS66	ss86352144	Genomic	CCGCATCTTTGACCTACACCACAGCTCACR GCAATGCCAGATCCTTARCCCATTGAGCAA	A/G	GKCCRGGGACTGAACCCGCATCCTCTTGGA TACAAGTTGGATTTGTTTCCGCTGCACCTC		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	114 / 30
LS67	ss86352145	Genomic	GCATCTTTGACCTACACCACAGCTCACRGC AATGCCAGATCCTTARCCCATTGAGCAARG	T/G	CCRGGGACTGAACCCGCATCCTCTTGGATA CAAGTTGGATTTGTTTCCGCTGCACCTCAA		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	114 / 30
LS68	ss86352146	Genomic	CRGGGACTGAACCCGCATCCTCTTGGATAC AAGTTGGATTTGTTTCCGCTGCACCTCAAC	A/C	GGAGCTCCCGTGATGGGCATTTAAAGTAAA AGACCTGATGGATGGAGAGAGGAACCACTT	0.3979	Large White, Landrace	12	ALOX15\|Arachidonate 15-lipoxygenase\|ALOX15	By sequencing	Max Rothschild (Fan)	114 / 70
LS13	ss86352092	Genomic	TTTTGAGTGGGAAGGTCTATTCTGAGGCTC AGGAGGGGACAGGAGGGSACTAGGAGCYCC	A/G	GGAGTAACTGGGAAMTGCCGCCCAGCTCAA AGGCGACAGTCTGAGCTCAGCCCCCAGCRG		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	113 / 30
LS14	ss86352093	Genomic	GTCTATTCTGAGGCTCAGGAGGGGACAGGA GGGSACTAGGAGCYCCRGGAGTAACTGGGA	A/C	CTGCCGCCCAGCTCAAAGGCGACAGTCTGA GCTCAGCCCCCAGCRGGAGGCCAAGGCTGT		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	113 / 30
LS16	ss86352095	Genomic	GCGACAGTCTGAGCTCAGCCCCCAGCRGGA GGCCAAGGCTGTGGGACAGAAAAGCCTCTG	C/T	TCGYCYGCTCATCCTGCTTTCTTCTTCAGG GCGTTCCTGGTGAAGCTGGAGCTCCTGGYC		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	113 / 30
LS17	ss86352096	Genomic	CAGTCTGAGCTCAGCCCCCAGCRGGAGGCC AAGGCTGTGGGACAGAAAAGCCTCTGYTCG	C/T	CYGCTCATCCTGCTTTCTTCTTCAGGGCGT TCCTGGTGAAGCTGGAGCTCCTGGYCTCGT		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	113 / 30
LS65	ss86352143	Genomic	CGCGAGATTMGAGCCGCATCTTTGACCTAC ACCACAGCTCACRGCAATGCCAGATCCTTA	A/G	CCCATTGAGCAARGKCCRGGGACTGAACCC GCATCCTCTTGGATACAAGTTGGATTTGTT		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	113 / 30
LS02	ss86352081	Genomic	AAAGATGGAAAAGCTGGAGGCCAAGGACCT CCTGGACTTATTAGCCCTACTG	C/T	AGGCAAATCCAGTGAATAGGGTATTCCTGG AGACCTTGGTGCTCCCGGCCCCTCGAACAA		Large White, Landrace		\|\|COL1A1	By sequencing	Max Rothschild (Fan)	112 / 30
LS15	ss86352094	Genomic	CRGGAGTAACTGGGAAMTGCCGCCCAGCTC AAAGGCGACAGTCTGAGCTCAGCCCCCAGC	A/G	GGAGGCCAAGGCTGTGGGACAGAAAAGCCT CTGYTCGYCYGCTCATCCTGCTTTCTTCTT		Large White, Landrace		\|\|COL2A1	By sequencing	Max Rothschild (Fan)	112 / 30
LS63	ss86352141	Genomic	TCGAATYGGAGCTRCAGCTGCCAGCCTACG CCAAAGCCGCAGCAACAGCAACGCGAGATT	A/C	GAGCCGCATCTTTGACCTACACCACAGCTC ACRGCAATGCCAGATCCTTARCCCATTGAG		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	112 / 30
LS64	ss86352142	Genomic	AAGCCGCAGCAACAGCAACGCGAGATTMGA GCCGCATCTTTGACCTACACCACAGCTCAC	A/G	GCAATGCCAGATCCTTARCCCATTGAGCAA RGKCCRGGGACTGAACCCGCATCCTCTTGG		Large White, Landrace		\|\|ALOX15	By sequencing	Max Rothschild (Fan)	112 / 30
SH453		Genomic	TGTATCGGGAGAGCAGCGCACCCTCTGTCA TTTTATCTGGGAGGTCCAGTCCCTTGCCTG	C/T	GTGGTGGGCAGAAAGAAGATCAGAGTGAGG CTGTGGCTGAGCCATGGCCCCAGGGAGGAC				\|CJ022379\|"TGFBI, Intron 9"	By sequencing	Max Rothschild (Du2)	107 / 30
LS81	ss86352159	Genomic	GTACCTGTCGGCGGAGGACAGCTGCCCGCC TTCGCCMGCCACGGA	A/G	AGGAGTTACTTCCACCTCTTCCCGCCCCCA CCGTCCCCCTGCACGGACTCGTCCTGACCT	0.1199	Large White, Landrace	2	\|\|LRP5	By sequencing	Max Rothschild (Fan)	104 / 70
LS80	ss86352158	Genomic	GTACCTGTCGGCGGAGGACAGCTGCCCGCC TTCGCC	A/C	GCCACGGARAGGAGTTACTTCCACCTCTTC CCGCCCCCACCGTCCCCCTGCACGGACTCG	0.1273	Large White, Landrace	2	\|\|LRP5	By sequencing	Max Rothschild (Fan)	95 / 70
LS41	ss86352119	Genomic	CGAGCCCCTCATCAAGTTCCAGGTGGGGCT GAAGAAGCTGAACCTGCACGAGGAGGAGCA	C/T	GTGCTGCTCATGGCCATCTGCATCGTCTCC CCAG	0.2072	Large White, Landrace	5	VDR\|Vitamin D receptor\|VDR	By sequencing	Max Rothschild (Fan)	93 / 70
SH443		Genomic	AGCCCGGGGACTGGGAGCCGGGGAGGGAGC CGGGGCTCCGAGCTGAAAGCGAGGGGAAGC	A/G	GCGCCGAAGTTTGCCTCGGACTCGCNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN				\|BW975702\|"TEF1, 3'UTR"	By sequencing	Max Rothschild (Du2)	43 / 30

100 Rows queried.

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