SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP, Martien Groenen, Max Rothschild, Miguel Perez, Kwan-suk Kim, Gary Rohrer groups
Scores: [ Quality Score / Info. Score ]
(a) Sequence quality score: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
(b) Information score: Range: 10-70. The presence of (1) minor allele frquency (MAF), (2) chromosome location, (3) annotation, each add 20 to the total "info score".
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu (about the compilation of this data set).
Date: July 31, 2008

Records 9101 - 9200:

Custom Name	dbSNP id	Molecule	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	MAF	MAF Species	Chromosome	Annotation	Reference	Source	Scores (seq.qual/info)
LS94	ss86352172	Genomic	GCACTGGGCAGCCAGAGGTCCATGTTCTGG GGGCATGGGATGCAAGGGCCCCTCAGCTCC	T/G	CCACCCTCACCTGCTCCCCCTTGTCCTCCA GCCAGTTAACATCACAGACCTGAGAAAGAA		Large White, Landrace		\|\|IL1RA	By sequencing	Max Rothschild (Fan)	120 / 30
LS95	ss86352173	Genomic	TGAGTCAGCCGCCTGTCCTGGCTGGTTCCT CTGCACTGCACTAGAGGCAGACCAGCCTGT	C/T	GGCCTCACCAACACGCCCAAAGCAGCCGTC AAGGTCACCAAGTTCTACTTCCAGCAGGAC	0.245	Large White, Landrace	3	IL1RA\|Interleukin 1 receptor antagonist\|IL1RA	By sequencing	Max Rothschild (Fan)	120 / 70
LS96	ss86352174	Genomic	ACGGGATTTTTCTTGGCCTTGGAAATTTCT AGTAATGCCCTGTGCCTCTGTTTCCATCCA	A/G	TGCTGAGTGTTGTAGGACCAGGGATGGGGT CACTGCTGGGGTTGGGGACATGTGGCAGAG	0.448	Large White, Landrace	13	PTHR1\|Parathormone receptor 1\|PTHR	By sequencing	Max Rothschild (Fan)	120 / 70
LS97	ss86352175	Genomic	CCGCGACTGTAAGTGCCCGGTCCTCCGCTG GACACCGGGTGAGGGCTGGGGAGGCCAGGA	A/G	CAGAGGCCACCAGGCTGGGGCGCTGCCGAG GGCTCGCCGCGGTCACTGATGCTCCTCGCC		Large White, Landrace		\|\|PTHLH	By sequencing	Max Rothschild (Fan)	120 / 30
LS98	ss86352176	Genomic	TGAATCTCATCCTTTCCTCTTAAAGAGATG GGACCCCCCAGACCCAAAAATGTACATGTT	C/T	ACGCCAAAGTCACAGATCTAGCAAGGTGCA CAACTGGGGCTCCAGGCCAAAGCCTCCTAA	0.1684	Large White, Landrace	5	PTHLH\|Parathormone like peptide\|PTHLH	By sequencing	Max Rothschild (Fan)	120 / 70
LS99	ss86352177	Genomic	GAGAGAGACAAGCTTACACAATGACGTAAA AAAAAGAGCTACAAGGAGTTCCCGTCGTGG	C/T	GCAGTGGAAACGAATCCGACTAGGAACCAT GAGGTTGCAGGTTCGATCCCTGGCCTCGCT		Large White, Landrace		\|\|OSCAR	By sequencing	Max Rothschild (Fan)	120 / 30
LS100	ss86352178	Genomic	ATCCCTGGCCTCGCTCAGTGGGTTGAGGAT CCAGCGTTGCCGTGAGCTGTGGTGTAGGTC	A/G	CAGAGGAGGCTCAGATCTGGTGTTGGTGTG GCTCTGGTGTAGGTGGGCGGCTACAGCTCC		Large White, Landrace		\|\|OSCAR	By sequencing	Max Rothschild (Fan)	120 / 30
LS103	ss86352181	Genomic	ATGGACCGTCCAAAAGCCAAGTGCCTCCCA GCTGGGCAGTGCTGCCCCTCTCTAGGAGTG	C/T	GGGCCTTGGAGGCTGGCATCTCGAGGTCCT CTGTGCCACCCGCCATCAGGTAGCGGTCAC		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	120 / 30
LS104	ss86352182	Genomic	TGCAGCGCCTCTCACTTGACCCTGCTACTC TGGGGCTCGGCTGCCCGCCTGCCGTCTCAC	A/G	CCCCCGCCCTCACCCCATGCAGCAGGAGCT CAGCCATGGTGAACGAACCCAGAGGGAACG	0.4333	Large White, Landrace	6	MTHFR\|Methylene Tetrahydrofolate Reductase\|MTHFR	By sequencing	Max Rothschild (Fan)	120 / 70
LS105	ss86352183	Genomic	CAGCAGTGGCAGCGAGAGCTCCAAGGAGAG CTCAAGGTGCTCTACACCGGGGCTGGACCC	C/T	GAGCGTCACGAGAGGCTCAGGGAGAAGATG AAGCGGAGGATGGAGTCAGGTGACAAGTGG		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	120 / 30
LS106	ss86352184	Genomic	GGGGAATGTGAGCTGTCAGCCCTGAGGCAG GGCTGCACTTTGACCCGGCAGAAAAAAGAG	T/G	TGGAAAAAAAGCCAAGCCAGGGTAGATCCT TCGATATACGCAGCTTCTGTTGTTTGTGAA		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	120 / 30
LS110	ss86352188	Genomic	GCCTCACCTGGGGTCCTCGATCCACAGGCC CAGACGCTTCAGCACCTCTGTGGTGGCCAC	C/T	TCGCGGTTGAGGGTATAGAAGTGGAGGCCC GGCACCAGGCCACTGGCCAGAAGCTCCTGG		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	120 / 30
LS111	ss86352189	Genomic	CGCGGGCCACAATCTCCTGAAGGCCCACGC CCTGGCGTGGCGCGTGTACGACGAGAAGTT	C/T	AGGCGCACCCAGCACGGTAAAATCTCCATC GCCTTGCAGGCGGACTGGATAGAACCGGCC	0.444	Large White, Landrace	11	KLOTHO\|Klotho\|KLOTHO	By sequencing	Max Rothschild (Fan)	120 / 70
LS112	ss86352190	Genomic	TCAGAAATATTTCAGTATTTAGCAACAGAT GTGGTTGGTCCTAGGAGGCTTATCAGCTCC	A/T	TATCTGCCCTGTCTACAGGAACAGACAAAC ATACACTCACGTACACACACGCTTGTGTTG	0.5156	Large White, Landrace	7	COL11A2\|Collagen, type XI, alpha 2\|COL11A2	By sequencing	Max Rothschild (Fan)	120 / 70
LS133	ss86352211	Genomic	CCGGGCTCCTCCCGCTACTCACTGACTTTC GAGGAGGCACAGCAGGCCTGCCTGCGCACT	A/G	GGGCTGTCATCGCCTCGCCTGAGCAACTCC AGGCCGCCTATGAAGCAGGCTACGAGCAGT	0.8865	Large White, Landrace	7	ACAN\|Aggrecan\|ACAN	By sequencing	Max Rothschild (Fan)	120 / 70
LS134	ss86352212	Genomic	GGACATCGGGGCGGAGGACACTCGGGTGGC AGTGGTGAACTACGCCAGCACCGTGGAGAA	C/T	GAGTTCCATCTCCAGACCCACTCGGATAAG CAGGCCCTGAAACGGGCGGTGGCGCGGATC		Large White, Landrace		\|\|MATN3	By sequencing	Max Rothschild (Fan)	120 / 30
LS135	ss86352213	Genomic	CGGATCACACCCTTGTCCACAGGCACCATG TCCGGTCTGGCCATCCAGACAGCGATGGAC	A/G	AAGCCTTCACCGTGGAGGCAGGGGCCCGGG GGCCCAACTCCAACATCCCTAAGGTGGCCA	0.1559	Large White, Landrace	3	MATN3\|Matrilin 3\|MATN3	By sequencing	Max Rothschild (Fan)	120 / 70
LS136	ss86352214	Genomic	CATTGAGAAGCTTTCGTCTAGATTCCAGGA AACCTTTTGTGGAAGTCTGCCCTTCCAACT	A/G	GGAAGGAGGTTAGAGTCGGATATTGTGTAT CCAAAGAAAAAAAGAGATTTCTTCTTCTTC	0.3778	Large White, Landrace	3	\|\|MATN3	By sequencing	Max Rothschild (Fan)	120 / 70
LS153	ss86352231	Genomic	CCCCAAAAACTTCTTTTCCCAGCTGCCCTT GACAGAGGGCATCGGCCCCTTGTTTAGAGC	A/G	AGAAAGGGAGCCATTCTACCAGACAGCTAC TGCCCAAGCCCTGCAACCCTCCGTCTCCTT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	120 / 30
LS157	ss86352235	Genomic	AGGTTCCCAGGCTGGGGGTCCAATCGGAGC TGTAGCTGTCGGCCTACACCAGAGCCACAG	C/T	ATTCAGGATCTGAGCTGCATCTGTGAATTG GTTCACGGAAAACCCAGGTCCTTAATCGAG		Large White, Landrace		\|\|LRCH1	By sequencing	Max Rothschild (Fan)	120 / 30
LS158	ss86352236	Genomic	CAACTCTATTCCCTTTCCTTTCTGCGTTTA TGGATCTGAAACTTTTTGTGTGTGTGTGCC	A/G	CACCCATGGCATACAGAAGTTCCCAGGCCA GGAACTGAACTTGAGCACAGAAGTGACAAT		Large White, Landrace		\|\|SPARC	By sequencing	Max Rothschild (Fan)	120 / 30
LS161	ss86352239	Genomic	GATTTTCATTCTTTTCTGTTTGAAACTAAC ACTCACAGAGAGAGATTTTGTGTTAATTAC	A/G	TGTCAGGGTATTGGCTGCCAGGGATTCATG CCTGAAGGTGGGCAAGGGAAGTCACAGACC		Large White, Landrace		\|\|SPARC	By sequencing	Max Rothschild (Fan)	120 / 30
LS162	ss86352240	Genomic	TCAGAGAGGTCCGCCAGGAGAACGAGGGCC CCCGGGGCCCCCTGGGCCTCCAGGAGTGCC	A/T	GGATCCGACGGAATCGACGTGAGTCTCTAA CCTGGGACGGGAGGGGGAGGGAGGCTGCGG		Large White, Landrace		\|\|COL9A2	By sequencing	Max Rothschild (Fan)	120 / 30
LS165	ss86352243	Genomic	AGGTAAGACCTGGGCCCCACCCAGCAGCAG TTCTCTCCCCCAGCTCTGGGATTACTGACC	C/T	AAAGACAATTGGATCTCTTCCATGGTGGCC TCACGCTCATCCAGTTCAGTCCCATACATC	0.4771	Large White, Landrace	6	COL9A2\|Collagen, type IX, alpha 2\|COL9A2	By sequencing	Max Rothschild (Fan)	120 / 70
LS166	ss86352244	Genomic	CGCCCGTCGGGGGCAGAGTGACACGAACGC AGGAAAGGCGGACGAGGCCTTCCTGTGGAA	A/G	GCCTACTGTGCCTGAGGCTCGGTGTTTGGC AGCACTGTGGCCAGGCATTAATCTGGAGGT		Large White, Landrace		\|\|COL9A3	By sequencing	Max Rothschild (Fan)	120 / 30
LS167	ss86352245	Genomic	GTGCAAAGTGAGTGCAAAGTACCATAATCA TGCTGGCTGAACTGCTAGGATCGCTGCCTG	C/T	TCAGGGTTTGAGAAGAAGCCAGAACCCTGC TCTTAGCAGCTGCCCCAGCTCTGGGCCCTC	0.3885	Large White, Landrace	14	LIF\|Leukemia inhibitory factor\|LIF	By sequencing	Max Rothschild (Fan)	120 / 70
LS168	ss86352246	Genomic	GAGGTCGGGGTCTCAGGAAGCCTGACATCC AGCAGTGCTAGTGTGTCTGACCCAGCATGA	C/T	TGTCTATTTATTTTGATGCCCTATTTATAT TAACTTATTGGTGCTTTAAATAGCAAAGTT		Large White, Landrace		\|\|LIF	By sequencing	Max Rothschild (Fan)	120 / 30
LS171	ss86352249	Genomic	TTGAGACCAAGTTCCAGGTGGACAAAGTCA ACTTCCAGTAAGTAAACGGTTCCTTTTTTT	A/T	AGAAAGAAAAATAGGTTTCTCGAGGTCCCC CCGCAGTGAGCATGGTGGACCATGGTAGCC	0.3966	Large White, Landrace	17	\|\|GNAS	By sequencing	Max Rothschild (Fan)	120 / 70
LS176	ss86352253	Genomic	GGAGAGGCCTAGATGTGAGGCCTCTCTGGC ACTCCTTGCTTCTGAACAGCTCGTTTTACT	C/T	TCTGAGCCTCAGTTTCCCCATCTTTAAAAT GGGAGTTATGTTGAGAGATTCCAGCTGTGG	0.206	Large White, Landrace	6	APOE\|Apolipoprotein E\|APOE	By sequencing	Max Rothschild (Fan)	120 / 70
LS177	ss86352254	Genomic	AGATTCCACCTGGCGGATCATGACCGCACT CAACATGTTAGGCGGGCGGCAGGTGATTGC	A/G	GCAGTGAAATGGGCAAAGGCAATACCAGGT AAGGTGCCAAAGATGCCACCCAGCTCAGGT		Large White, Landrace		\|\|GCR	By sequencing	Max Rothschild (Fan)	120 / 30
LS178	ss86352255	Genomic	CTACCCAGCCCCCTTTTCAAGCACCAATGG GCTCCTGTCACCTGCAGGCAGTCCTCCAGC	A/G	CCCACCTCGGGCTATGCCAATGACTACCCT CCCTTTTCCCACTCATTCCCTGGGCCCACG		Large White, Landrace		\|\|SP7	By sequencing	Max Rothschild (Fan)	120 / 30
LS92	ss86352170	Genomic	GTGAAAGTCACAGTTTTAATAAACATATTT ACACTTGAAACATTAGCCTACATTCATATA	C/T	GACCTGAGTTTTAGCTATGCAACCATGTGA ATATTTTTGAATATTTTGAAAGCTTTAAAC		Large White, Landrace		\|\|PDE4D	By sequencing	Max Rothschild (Fan)	119 / 30
LS93	ss86352171	Genomic	TGAATATTTTTGAATATTTTGAAAGCTTTA AACTCAAGTCCCTGTGATATTAGAAAGTAT	T/G	GCACTTTGCCTATATCACAACTGATGTACC ATACAGATGTTAGCAGTGGTTTGCCAGATC		Large White, Landrace		\|\|PDE4D	By sequencing	Max Rothschild (Fan)	119 / 30
LS101	ss86352179	Genomic	TGGCATTGTCACTACGGTACAGGTTTAAAC CCTGGCCCAGGAATCTTTGCATGCCACCAA	C/T	AYAGCCAAAAAAAAAAAAAAAAGATTTTCT TACCGTTTAAACTCCCAACAATTAATCTTC	0.3966	Large White, Landrace	13	CASR\|Calcium sensing receptor\|CASR	By sequencing	Max Rothschild (Fan)	119 / 70
LS102	ss86352180	Genomic	GCATTGTCACTACGGTACAGGTTTAAACCC TGGCCCAGGAATCTTTGCATGCCACCAAYA	C/T	AGCCAAAAAAAAAAAAAAAAGATTTTCTTA CCGTTTAAACTCCCAACAATTAATCTTCTA		Large White, Landrace		\|\|CASR	By sequencing	Max Rothschild (Fan)	119 / 30
LS107	ss86352185	Genomic	CCATCAGAGCCGGGAGGAGGTCACGGGCTA CCTGCACAAGGCCAAGCGGCTGGGCCTGAA	A/G	AACATCTTGGCGCTGAGGGGAGGTGCGGAG CCCACCCGCGGCCCTCTGGGGTTCTGCTTT	0.4333	Large White, Landrace	6	\|\|MTHFR	By sequencing	Max Rothschild (Fan)	119 / 70
LS109	ss86352187	Genomic	CTCCTCTGTCCCTGAAACGGYCCTTTGCTT TTCTCCGTGTCCCACACTGAGTCCACGCAG	T/G	CTCCCATCCCTGCCGGTAGCATCCATGGGC ATCATGGTCGGGAGGACCGTGGGCGGCACA		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	119 / 30
LS129	ss86352207	Genomic	ATGGCGAGAGATGGGGACGATTTCAGGGTG GGAACACGAATGACAGCCACTGGCTCCCAA	C/T	CTGGTTCATGTTTTGTCCTGCCTTTTCACT TACAAATTCATTGATGAGGTCTCATTTCAY		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	119 / 30
LS132	ss86352210	Genomic	RTCAGTTGGAGAGATAGGGCTTACATCCAG GACTATGAGACATCAAAAGAAAAAGGCATC	A/G	GAGAATAAGGGCGATGGTGCCAGATGGGAC CATTCATCCATCATTCATTCATTCATGTAG		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	119 / 30
LS150	ss86352228	Genomic	GATCCCATGTTCCGGATTGGGGGGCAGGGA GGGTGCCGCTGTTAGAAATGCGAAGTGTAC	C/T	TCAGTAACAATAGGTTCCCTCGCCTGTCAC CCCTTTTCTTTCCCCGACCCCACCCAGCCT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	119 / 30
LS152	ss86352230	Genomic	GACCCCACCCAGCCTGCCCCGCAGCTACAG CAGATGAGGCAGCCCTGGGACCCRGCACAG	C/T	GCTTTGCATCACGGCTCTTTGCTCTGACCC CGCAGGACAGCCCCAGGAGACTGCCGCAGT	0.2926	Large White, Landrace	14	ADAM12\|ADAM metallopeptidase domain 12\|ADAM12	By sequencing	Max Rothschild (Fan)	119 / 70
LS159	ss86352237	Genomic	ACGGTGCTAAACAGGGAAATTTTAACCCAA GTCATGACATTCTTAGCTGTAACTCAGCTC	A/G	CACGGCCTCTTGCTCACCCACTAAGGAGCC CATTTYTCTCTTGCCATTTGCAGCTCTTGC		Large White, Landrace		\|\|SPARC	By sequencing	Max Rothschild (Fan)	119 / 30
LS160	ss86352238	Genomic	ACATTCTTAGCTGTAACTCAGCTCRCACGG CCTCTTGCTCACCCACTAAGGAGCCCATTT	C/T	TCTCTTGCCATTTGCAGCTCTTGCCCCTTG TCTTAGTGACGTGTGGGTGGAAACTGATCT	0.1946	Large White, Landrace	16	SPARC\|Secreted protein, acidic, cysteine-rich\|SPARC	By sequencing	Max Rothschild (Fan)	119 / 70
LS163	ss86352241	Genomic	GCCTCTCCAAGTGGCCTTACCAGAGTCTGG AGTCCTGGGTGGCCATTCCAGCTCTGCCTC	C/T	AAGGGGCTGGGGGACCTTTGACTGCAAAAT AGCCTGAGGAARGGAGAGGTTAACCCCCTG		Large White, Landrace		\|\|COL9A2	By sequencing	Max Rothschild (Fan)	119 / 30
LS164	ss86352242	Genomic	CCATTCCAGCTCTGCCTCYAAGGGGCTGGG GGACCTTTGACTGCAAAATAGCCTGAGGAA	A/G	GGAGAGGTTAACCCCCTGTCTCCCAGGGGC CAGGGGCAGGATGCTCTGCCTTCCTCGAGA		Large White, Landrace		\|\|COL9A2	By sequencing	Max Rothschild (Fan)	119 / 30
LS169	ss86352247	Genomic	GATTGACGTCATCAAGCAGGCTGACTACGT GCCCAGCGACCAGGTATGCACCCCTTCTCA	C/G	AGGGCAGAGGATGCAGAGYCTTCTTTCCAA GCCAGTCAGCATTTTTGCTCCAGGTTGGCA	0.3964	Large White, Landrace	17	GNAS\|GNAS complex locus\|GNAS	By sequencing	Max Rothschild (Fan)	119 / 70
LS170	ss86352248	Genomic	GCTGACTACGTGCCCAGCGACCAGGTATGC ACCCCTTCTCASAGGGCAGAGGATGCAGAG	C/T	CTTCTTTCCAAGCCAGTCAGCATTTTTGCT CCAGGTTGGCAATGATTAACACTTGGGTTG		Large White, Landrace		\|\|GNAS	By sequencing	Max Rothschild (Fan)	119 / 30
LS179	ss86352256	Genomic	CCCCTATGGCTCCTGGTACAAGGCAGGCAT CCACGCAGGCATCTCACCAGGCCCAGGCAA	C/T	GCACCCACGCCTTGGTGGGACATGCACCCT GGGGGCAACTGGCTAGGTGGAGGGCAAGGC	0.1251	Large White, Landrace	5	SP7\|Sp7 transcription factor\|SP7	By sequencing	Max Rothschild (Fan)	119 / 70
LS108	ss86352186	Genomic	GCCCACCCGCGGCCCTCTGGGGTTCTGCTT TCCCGAAGACCTCCTCTGTCCCTGAAACGG	C/T	CCTTTGCTTTTCTCCGTGTCCCACACTGAG TCCACGCAGKCTCCCATCCCTGCCGGTAGC		Large White, Landrace		\|\|MTHFR	By sequencing	Max Rothschild (Fan)	118 / 30
LS113	ss86352191	Genomic	TGCTCAGAGGAGAGGCAAGCCTGGGCCTGA AGTTGGGGGNTCCACAGGCCATATGTGTCT	A/C	CCCCACACTCACCCTTCTCTCTCTTGTGTC TCCCTCTCAAGACACAGCAAGGCCGGACGG		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	118 / 30
LS115	ss86352193	Genomic	TCGAACACCTGTGCTGGAGCAGCTGCCAGT GCTGGACGCCTCCTTCTCAGACCTGGGGGC	A/G	CCCCCGAGGCGGGGAGGGGTGCTGCTGGGG CCTGTCTGCTTCATGGGCTAGGACCTCCTC		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	118 / 30
LS119	ss86352197	Genomic	GGGCCTTGGGCCAGGGCACCRAGGGCCCCC TGTCAGGGGCAGTCCCGGGGAGGGGTGCAC	C/T	GGGGGCTCACTGACTGCCCTCCACCTGAGC CAGGAACGTTAAGACTATAACCATATGACG		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	118 / 30
LS130	ss86352208	Genomic	YCTGGTTCATGTTTTGTCCTGCCTTTTCAC TTACAAATTCATTGATGAGGTCTCATTTCA	C/T	CCTCCCAGCAGCCTTACCCAGAACAGGCTT GACTCACCCCCATTTCATAGATGGGAAAGT		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	118 / 30
LS131	ss86352209	Genomic	ACTCACCCCCATTTCATAGATGGGAAAGTC TGAGGGAAGAGATGATTTGTTTGGCAGTGG	A/G	TCAGTTGGAGAGATAGGGCTTACATCCAGG ACTATGAGACATCAAAAGAAAAAGGCATCR		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	118 / 30
LS137	ss86352215	Genomic	TTGGCACCTTTCCTGTTCTTGGCACCTTTC CTGGGTTTTGGCTGCTGCGTTTTGATCTCT	C/T	TGTGYCTCCACACGACTTTCACAGACACAT GGCCTCTTGTGTTCTCATCCCCAGGGTACA		Large White, Landrace		\|\|ANKH	By sequencing	Max Rothschild (Fan)	118 / 30
LS138	ss86352216	Genomic	ACCTTTCCTGTTCTTGGCACCTTTCCTGGG TTTTGGCTGCTGCGTTTTGATCTCTYTGTG	C/T	CTCCACACGACTTTCACAGACACATGGCCT CTTGTGTTCTCATCCCCAGGGTACACGGAG	0.374	Large White, Landrace	16	ANKH\|Ankylosis homolog\|ANKH	By sequencing	Max Rothschild (Fan)	118 / 70
LS139	ss86352217	Genomic	CACTCCCCCAGGTGCCTGGAGCACCTGCAT GGTGGCCGTGATGGGGAAGGGAGGACACAG	A/C	CGTCACTGGGAAGGGCCGCGGGGAAGTGTC CTGGGGCAGAGGCAGGTCTCCATCAGCTGA		Large White, Landrace		\|\|ANKH	By sequencing	Max Rothschild (Fan)	118 / 30
LS140	ss86352218	Genomic	CACTGGGAAGGGCCGCGGGGAAGTGTCCTG GGGCAGAGGCAGGTCTCCATCAGCTGATGG	A/G	CAARAGGTGGAAGGCGGGACCCTCCAGTGC CCAGCGCAGAGCCAGGCACACAGACGATGC		Large White, Landrace		\|\|ANKH	By sequencing	Max Rothschild (Fan)	118 / 30
LS151	ss86352229	Genomic	TTTCCCCGACCCCACCCAGCCTGCCCCGCA GCTACAGCAGATGAGGCAGCCCTGGGACCC	A/G	GCACAGYGCTTTGCATCACGGCTCTTTGCT CTGACCCCGCAGGACAGCCCCAGGAGACTG		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	118 / 30
LS154	ss86352232	Genomic	TAGAGAGATGAAGCAGCTGCAAGTATTACT GCTTGAGAATAACCCTTTGCAGTCTCCTCC	C/G	GCGCAGGTGAGGGGGTCTCCCAGCAAAGCT GTTGGGGGGGGCGGTGGGGGCGGGGRAGGA		Large White, Landrace		\|\|LRCH1	By sequencing	Max Rothschild (Fan)	118 / 30
LS155	ss86352233	Genomic	CTCCSGCGCAGGTGAGGGGGTCTCCCAGCA AAGCTGTTGGGGGGGGCGGTGGGGGCGGGG	A/G	AGGAAATATGCCATCAGTAGCGCCTGCCTY GCTCTCAGCAGAATCACTTTTTTGATATTC		Large White, Landrace		\|\|LRCH1	By sequencing	Max Rothschild (Fan)	118 / 30
LS156	ss86352234	Genomic	AAGCTGTTGGGGGGGGCGGTGGGGGCGGGG RAGGAAATATGCCATCAGTAGCGCCTGCCT	C/T	GCTCTCAGCAGAATCACTTTTTTGATATTC TGCTCAATTCGTGTATGAGACTTGATCATA	0.3798	Large White, Landrace	11	LRCH1\|Leucine-rich repeats and calponin homology domain containing 1\|LRCH1	By sequencing	Max Rothschild (Fan)	118 / 70
LS172	ss86352250	Genomic	GCCTCTGAAGTCACAGCAGTGGGAAGCTCC CAGTGAATCAACATCCTCAAGTGGACATTG	C/G	CCTTGAGCCCTGTGGGTTGGGAGTCAGGAG AGCCACATTCTYAGGGAAWGCCAGAGGGAC	0.0905	Large White, Landrace	2	CALCA\|Calcitonin-related polypeptide alpha\|CALCA	By sequencing	Max Rothschild (Fan)	118 / 70
LS173	ss86352251	Genomic	ATCCTCAAGTGGACATTGSCCTTGAGCCCT GTGGGTTGGGAGTCAGGAGAGCCACATTCT	C/T	AGGGAAWGCCAGAGGGACCAGGAAGCCTGG CTGCTGATCCTGGGAAGGAGGCAGGCAGTG		Large White, Landrace		\|\|CALCA	By sequencing	Max Rothschild (Fan)	118 / 30
LS174	ss86352252	Genomic	AGTGGACATTGSCCTTGAGCCCTGTGGGTT GGGAGTCAGGAGAGCCACATTCTYAGGGAA	A/T	GCCAGAGGGACCAGGAAGCCTGGCTGCTGA TCCTGGGAAGGAGGCAGGCAGTGGCTTAGA		Large White, Landrace		\|\|CALCA	By sequencing	Max Rothschild (Fan)	118 / 30
LS114	ss86352192	Genomic	ACACTCACCCTTCTCTCTCTTGTGTCTCCC TCTCAAGACACAGCAAGGCCGGACGGTGCT	A/G	GAAGTTCGAACACCTGTGCTGGAGCAGCTG CCAGTGCTGGACGCCTCCTTCTCAGACCTG		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	117 / 30
LS116	ss86352194	Genomic	GTGCTGCTGGGGCCTGTCTGCTTCATGGGC TAGGACCTCCTCCTCTGTCTGACCCTGTCC	A/G	TCGAAACCAGGCCCACCTGGAATCCCACAG CCTCCGCTCTGTGCCACCTCGCAGGAGGGC		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	117 / 30
LS117	ss86352195	Genomic	GGCCCACCTGGAATCCCACAGCCTCCGCTC TGTGCCACCTCGCAGGAGGGCTCCTCACCA	C/T	CTAGGGGGCCTTGGGCCAGGGCACCRAGGG CCCCCTGTCAGGGGCAGTCCCGGGGAGGGG		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	117 / 30
LS118	ss86352196	Genomic	GCTCTGTGCCACCTCGCAGGAGGGCTCCTC ACCAYCTAGGGGGCCTTGGGCCAGGGCACC	A/G	AGGGCCCCCTGTCAGGGGCAGTCCCGGGGA GGGGTGCACYGGGGGCTCACTGACTGCCCT		Large White, Landrace		\|\|COL11A2	By sequencing	Max Rothschild (Fan)	117 / 30
LS125	ss86352203	Genomic	GTGGGGCAGGGGGCAGGGTGAGGGGGGCCC TGCAGGGAGAGGCGAGCGCTGTGTCCCCTC	A/G	TGTGGTGGGATCGGGGCAGGMTCCCTCTTR CCTGCCTCCTGCTGAGGATGGCTGGATGCT	0.822	Large White, Landrace	6	\|\|CMP	By sequencing	Max Rothschild (Fan)	117 / 70
LS126	ss86352204	Genomic	GGGGGGCCCTGCAGGGAGAGGCGAGCGCTG TGTCCCCTCRTGTGGTGGGATCGGGGCAGG	A/G	TCCCTCTTRCCTGCCTCCTGCTGAGGATGG CTGGATGCTGGCYGGATAGGCTGGACCAGC		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	117 / 30
LS127	ss86352205	Genomic	TGCAGGGAGAGGCGAGCGCTGTGTCCCCTC RTGTGGTGGGATCGGGGCAGGMTCCCTCTT	A/G	CCTGCCTCCTGCTGAGGATGGCTGGATGCT GGCYGGATAGGCTGGACCAGCTTTGGTACT		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	117 / 30
LS128	ss86352206	Genomic	GGTGGGATCGGGGCAGGMTCCCTCTTRCCT GCCTCCTGCTGAGGATGGCTGGATGCTGGC	C/T	GGATAGGCTGGACCAGCTTTGGTACTGACT CCAAAGCAGAAGCTCCTAAAGGGTAACCAG		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	117 / 30
LS143	ss86352221	Genomic	TGCAAGCTCCAGAGCCGTCAGTGAATGATG GCAAAGTTACTSCTCCTCAGACAGGACCTT	C/T	GCAGTAAGACTMACTTGCCATGCCACCCCT CAGAGATCTACTCGACTTCTGTCCCTTCCT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	117 / 30
LS144	ss86352222	Genomic	AGCCGTCAGTGAATGATGGCAAAGTTACTS CTCCTCAGACAGGACCTTYGCAGTAAGACT	A/C	ACTTGCCATGCCACCCCTCAGAGATCTACT CGACTTCTGTCCCTTCCTTCAAAGTTCATT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	117 / 30
LS88	ss86352166	Genomic	TGAGTGGACAAAGGCRTTACTGTGCCCGTG TACAGATGGGGAAACTGAGGCTCAGAAGCA	C/G	AGTGACCTGGGCACCGTCCCACAGGCAGGA CAGCAGGGAGGGGACTTGAAGYCAGGTGAT		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	116 / 30
LS89	ss86352167	Genomic	CAGAAGCASAGTGACCTGGGCACCGTCCCA CAGGCAGGACAGCAGGGAGGGGACTTGAAG	C/T	CAGGTGATRCTGGGCCTCTCCCCACGGTGA CACGAGGYCTGGGGCCAAGCATCTTTCTTC		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	116 / 30
LS120	ss86352198	Genomic	TGCCTTCTCACATCCCCTAAGCCCCCCACC TTCCCCCAAGACAGCCCAGTCCTGGCCCAG	C/T	CTCCCCAGCAGGTAACCRCTCACCATGYAC TTTCTCTTTTCCACCTTCCRCCCACCCCAG		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	116 / 30
LS121	ss86352199	Genomic	AAGCCCCCCACCTTCCCCCAAGACAGCCCA GTCCTGGCCCAGYCTCCCCAGCAGGTAACC	A/G	CTCACCATGYACTTTCTCTTTTCCACCTTC CRCCCACCCCAGAGGAAGACCCGTGCGCCT		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	116 / 30
LS122	ss86352200	Genomic	CCTTCCCCCAAGACAGCCCAGTCCTGGCCC AGYCTCCCCAGCAGGTAACCRCTCACCATG	C/T	ACTTTCTCTTTTCCACCTTCCRCCCACCCC AGAGGAAGACCCGTGCGCCTGYGAGTCCAT		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	116 / 30
LS123	ss86352201	Genomic	CCTGGCCCAGYCTCCCCAGCAGGTAACCRC TCACCATGYACTTTCTCTTTTCCACCTTCC	A/G	CCCACCCCAGAGGAAGACCCGTGCGCCTGY GAGTCCATCGTGAAATTTCAGAGCAAAGTG		Large White, Landrace		\|\|CMP	By sequencing	Max Rothschild (Fan)	116 / 30
LS124	ss86352202	Genomic	TCACCATGYACTTTCTCTTTTCCACCTTCC RCCCACCCCAGAGGAAGACCCGTGCGCCTG	C/T	GAGTCCATCGTGAAATTTCAGAGCAAAGTG GAGGGTCTGTTGCAGGCCCTGACCAGGAAG	0.7345	Large White, Landrace	6	CMP\|Cartilage matrix protein\|CMP	By sequencing	Max Rothschild (Fan)	116 / 70
LS141	ss86352219	Genomic	GTGGGACTGTAGTGATGGCTCCTCGTTACC TTCTTCCCCTGCTGTTGTCACACCTGGGGG	C/T	AGGGGCCCTGTGTGGCCAGGGCTGAGGTCC CAYCTGCCAGATATGTTCCTGCAAGCTCCA		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS142	ss86352220	Genomic	TTCCCCTGCTGTTGTCACACCTGGGGGYAG GGGCCCTGTGTGGCCAGGGCTGAGGTCCCA	C/T	CTGCCAGATATGTTCCTGCAAGCTCCAGAG CCGTCAGTGAATGATGGCAAAGTTACTSCT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS145	ss86352223	Genomic	ATAAGAAAAGCACCCTTGAAAAGCTCAGGT ACGCTGGGTTGGGGTCCTCTTCTCAAGAAA	C/T	GGCGTTYGAAAGAACGTACAACCCACYGCT TCTCCCTTTGTTKCCTTCGCAAAGAAAAGG		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS146	ss86352224	Genomic	AAGCACCCTTGAAAAGCTCAGGTACGCTGG GTTGGGGTCCTCTTCTCAAGAAAYGGCGTT	C/T	GAAAGAACGTACAACCCACYGCTTCTCCCT TTGTTKCCTTCGCAAAGAAAAGGTCGGCRT		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS147	ss86352225	Genomic	GGTACGCTGGGTTGGGGTCCTCTTCTCAAG AAAYGGCGTTYGAAAGAACGTACAACCCAC	C/T	GCTTCTCCCTTTGTTKCCTTCGCAAAGAAA AGGTCGGCRTTCCTGTGGCTTCAGTTTTTA		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS148	ss86352226	Genomic	GTCCTCTTCTCAAGAAAYGGCGTTYGAAAG AACGTACAACCCACYGCTTCTCCCTTTGTT	T/G	CCTTCGCAAAGAAAAGGTCGGCRTTCCTGT GGCTTCAGTTTTTAAAATTTCTGCCACATC		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS149	ss86352227	Genomic	TYGAAAGAACGTACAACCCACYGCTTCTCC CTTTGTTKCCTTCGCAAAGAAAAGGTCGGC	A/G	TTCCTGTGGCTTCAGTTTTTAAAATTTCTG CCACATCAACTGCCCGCTTTACTTTCCATG		Large White, Landrace		\|\|ADAM12	By sequencing	Max Rothschild (Fan)	116 / 30
LS181	ss86352258	Genomic	CCTTTTTGACATAGTGCTAAATTGGTAATT GGAAAATCTGACTTCTTTCCATCTCTTTTC	C/T	CTAATTGGMTACATGAACTTGAGAAGTCAC ATCATYTGTATAAATTTTCAATTCACAACC		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	116 / 30
LS83	ss86352161	Genomic	AAAAGAACAAGTCAGACTCCCTGTGGACAC GAAAGAACAATTAACCGAGGGCCGGCACY	A/G	CCTTGTCTTCCCAGGGCCYGCCTGGGGACC ATTAGTGGGGGCATCTAYCCYGCCTGGCTC		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	115 / 30
LS84	ss86352162	Genomic	CCCTGTGGACACGAAAGAACAATTAACCGA GGGCCGGCACY RCCTTGTCTTCCCAGGGCC	C/T	GCCTGGGGACCATTAGTGGGGGCATCTAYC CYGCCTGGCTCTGGCCTGGGCGCCTTACGT		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	115 / 30
LS85	ss86352163	Genomic	AGGGCCGGCACY RCCTTGTCTTCCCAGGGC CYGCCTGGGGACCATTAGTGGGGGCATCTA	C/T	CCYGCCTGGCTCTGGCCTGGGCGCCTTACG TGCCTTATGTCACTGAGTGGACAAAGGCRT		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	115 / 30
LS86	ss86352164	Genomic	GCCGGCACY RCCTTGTCTTCCCAGGGCCYG CCTGGGGACCATTAGTGGGGGCATCTAYCC	C/T	GCCTGGCTCTGGCCTGGGCGCCTTACGTGC CTTATGTCACTGAGTGGACAAAGGCRTTAC		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	115 / 30
LS87	ss86352165	Genomic	AYCCYGCCTGGCTCTGGCCTGGGCGCCTTA CGTGCCTTATGTCACTGAGTGGACAAAGGC	A/G	TTACTGTGCCCGTGTACAGATGGGGAAACT GAGGCTCAGAAGCASAGTGACCTGGGCACC	0.2541	Large White, Landrace	6	BMP8\|Bone morphogenetic protein 8\|BMP8	By sequencing	Max Rothschild (Fan)	115 / 70
LS82	ss86352160	Genomic	AAAAGAACAAGTCAGACTCCCTGTGGACAC GAAAGAACAATTAACCGAGGGCCGGCAC	C/T	RCCTTGTCTTCCCAGGGCCYGCCTGGGGAC CATTAGTGGGGGCATCTAYCCYGCCTGGCT		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	114 / 30
LS90	ss86352168	Genomic	AGTGACCTGGGCACCGTCCCACAGGCAGGA CAGCAGGGAGGGGACTTGAAGYCAGGTGAT	A/G	CTGGGCCTCTCCCCACGGTGACACGAGGYC TGGGGCCAAGCATCTTTCTTCTCT		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	111 / 30
LS180	ss86352257	Genomic	GTGGGACATGCACCCTGGGGGCAACTGGCT AGGTGGAGGGCAAGGCCAGGGTGATGGGCT	T/G	CAAGGGACACTGCCCACAAGGTCCAG		Large White, Landrace		\|\|SP7	By sequencing	Max Rothschild (Fan)	85 / 30
LS91	ss86352169	Genomic	ACAGCAGGGAGGGGACTTGAAGYCAGGTGA TRCTGGGCCTCTCCCCACGGTGACACGAGG	C/T	CTGGGGCCAAGCATCTTTCTTCTCTG		Large White, Landrace		\|\|BMP8	By sequencing	Max Rothschild (Fan)	83 / 30
LS175	ss86352513	Genomic	GCCTGTATTGGGTTTGCTTCCTCTCTCCAG GTCCGCTTTGGAGACCCTCCCAGATCCTGG	A/G	CCACTCAGTGAGAAGGAAGG		Large White, Landrace		\|\|CALCA	By sequencing	Max Rothschild (Fan)	80 / 30

100 Rows queried.

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